Bimodal gene expression in noncooperative regulatory systems

• Published in: Proceedings of the National Academy of Sciences - PNAS 2010-12, Vol.107 (51), p.22096-22101
• Main Authors: Ochab-Marcinek, Anna, Tabaka, Marcin, Peskin, Charles S.
• Format: Article
• Language: English
• Subjects: Animals; Biological Sciences; Cell survival; Control loops; Cooperativity; Feedback; Fluorescence; Gene expression; Gene Expression Regulation - physiology; Genes; Genotype & phenotype; Humans; Messenger RNA; Models, Biological; Physical Sciences; Population distributions; Positive feedback; Proteins; Repressors; rev genes; Signal noise; Tetracyclines; Transcription factors; Transcription Factors - metabolism; Transfer functions
• ISSN: 0027-8424; 1091-6490
• DOI: 10.1073/pnas.1008965107

Bimodality of gene expression, as a mechanism contributing to phenotypic diversity, enhances the survival of cells in a fluctuating environment. To date, the bimodal response of a gene regulatory system has been attributed to the cooperativity of transcription factor binding or to feedback loops. It has remained unclear whether noncooperative binding of transcription factors can give rise to bimodality in an open-loop system. We study a theoretical model of gene expression in a two-step cascade (a deterministically monostable system) in which the regulatory gene produces transcription factors that have a nonlinear effect on the activity of the target gene. We show that a unimodal distribution of transcription factors over the cell population can generate a bimodal steadystate output without cooperative transcription factor binding. We introduce a simple method of geometric construction that allows one to predict the onset of bimodality. The construction only involves the parameters of bursting of the regulatory gene and the dose—response curve of the target gene. Using this method, we show that the gene expression may switch between unimodal and bimodal as the concentration of inducers or corepressors is varied. These findings may explain the experimentally observed bimodal response of cascades consisting of a fluorescent protein reporter controlled by the tetracycline repressor. The geometric construction provides a useful tool for designing experiments and for interpretation of their results. Our findings may have important implications for understanding the strategies adopted by cell populations to survive in changing environments.