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A Three-Dimensional Deep Convolutional Neural Network for Automatic Segmentation and Diameter Measurement of Type B Aortic Dissection
Objective: To provide an automatic method for segmentation and diameter measurement of type B aortic dissection (TBAD). Materials and Methods: Aortic computed tomography angiographic images from 139 patients with TBAD were consecutively collected. We implemented a deep learning method based on a thr...
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Published in: | Korean journal of radiology 2021, Vol.22 (2), p.168-178 |
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container_title | Korean journal of radiology |
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creator | Yitong Yu Yang Gao Jianyong Wei Fangzhou Liao Qianjiang Xiao Jie Zhang Weihua Yin Bin Lu |
description | Objective: To provide an automatic method for segmentation and diameter measurement of type B aortic dissection (TBAD). Materials and Methods: Aortic computed tomography angiographic images from 139 patients with TBAD were consecutively collected. We implemented a deep learning method based on a three-dimensional (3D) deep convolutional neural (CNN) network, which realizes automatic segmentation and measurement of the entire aorta (EA), true lumen (TL), and false lumen (FL). The accuracy, stability, and measurement time were compared between deep learning and manual methods. The intra- and inter-observer reproducibility of the manual method was also evaluated. Results: The mean dice coefficient scores were 0.958, 0.961, and 0.932 for EA, TL, and FL, respectively. There was a linear relationship between the reference standard and measurement by the manual and deep learning method (r = 0.964 and 0.991, respectively). The average measurement error of the deep learning method was less than that of the manual method (EA, 1.64% vs. 4.13%; TL, 2.46% vs. 11.67%; FL, 2.50% vs. 8.02%). Bland-Altman plots revealed that the deviations of the diameters between the deep learning method and the reference standard were -0.042 mm (-3.412 to 3.330 mm), -0.376 mm (-3.328 to 2.577 mm), and 0.026 mm (-3.040 to 3.092 mm) for EA, TL, and FL, respectively. For the manual method, the corresponding deviations were -0.166 mm (-1.419 to 1.086 mm), -0.050 mm (-0.970 to 1.070 mm), and -0.085 mm (-1.010 to 0.084 mm). Intra- and inter-observer differences were found in measurements with the manual method, but not with the deep learning method. The measurement time with the deep learning method was markedly shorter than with the manual method (21.7 ± 1.1 vs. 82.5 ± 16.1 minutes, p < 0.001). Conclusion: The performance of efficient segmentation and diameter measurement of TBADs based on the 3D deep CNN was both accurate and stable. This method is promising for evaluating aortic morphology automatically and alleviating the workload of radiologists in the near future. |
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fullrecord | <record><control><sourceid>kisti</sourceid><recordid>TN_cdi_kisti_ndsl_JAKO202119077046656</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>JAKO202119077046656</sourcerecordid><originalsourceid>FETCH-kisti_ndsl_JAKO2021190770466563</originalsourceid><addsrcrecordid>eNqNi0FuwjAQRa2KSk2hd5gNy0gTBwJepgSEWrUsyB5ZMGldEht5nFYcgHtDoAdg9aT_33sQkUQcx9M0xZ6IEilVnCmpnsQz8w-iVDgdReKUQ_ntieLCNGTZOKtrKIgOMHP219VtuE2f1Porwp_ze6ich7wNrtHBbGFNX5c46M4FbXdQGN1QIA8fpLn11L3gKiiPB4JXyJ3vssIw07aLBuKx0jXTyz_7YriYl7NlvDcczMbuuN685e8riTJJFE4mOMqycZbe650B4P9RuQ</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>A Three-Dimensional Deep Convolutional Neural Network for Automatic Segmentation and Diameter Measurement of Type B Aortic Dissection</title><source>Publicly Available Content Database</source><source>PubMed Central</source><creator>Yitong Yu ; Yang Gao ; Jianyong Wei ; Fangzhou Liao ; Qianjiang Xiao ; Jie Zhang ; Weihua Yin ; Bin Lu</creator><creatorcontrib>Yitong Yu ; Yang Gao ; Jianyong Wei ; Fangzhou Liao ; Qianjiang Xiao ; Jie Zhang ; Weihua Yin ; Bin Lu</creatorcontrib><description>Objective: To provide an automatic method for segmentation and diameter measurement of type B aortic dissection (TBAD). Materials and Methods: Aortic computed tomography angiographic images from 139 patients with TBAD were consecutively collected. We implemented a deep learning method based on a three-dimensional (3D) deep convolutional neural (CNN) network, which realizes automatic segmentation and measurement of the entire aorta (EA), true lumen (TL), and false lumen (FL). The accuracy, stability, and measurement time were compared between deep learning and manual methods. The intra- and inter-observer reproducibility of the manual method was also evaluated. Results: The mean dice coefficient scores were 0.958, 0.961, and 0.932 for EA, TL, and FL, respectively. There was a linear relationship between the reference standard and measurement by the manual and deep learning method (r = 0.964 and 0.991, respectively). The average measurement error of the deep learning method was less than that of the manual method (EA, 1.64% vs. 4.13%; TL, 2.46% vs. 11.67%; FL, 2.50% vs. 8.02%). Bland-Altman plots revealed that the deviations of the diameters between the deep learning method and the reference standard were -0.042 mm (-3.412 to 3.330 mm), -0.376 mm (-3.328 to 2.577 mm), and 0.026 mm (-3.040 to 3.092 mm) for EA, TL, and FL, respectively. For the manual method, the corresponding deviations were -0.166 mm (-1.419 to 1.086 mm), -0.050 mm (-0.970 to 1.070 mm), and -0.085 mm (-1.010 to 0.084 mm). Intra- and inter-observer differences were found in measurements with the manual method, but not with the deep learning method. The measurement time with the deep learning method was markedly shorter than with the manual method (21.7 ± 1.1 vs. 82.5 ± 16.1 minutes, p < 0.001). Conclusion: The performance of efficient segmentation and diameter measurement of TBADs based on the 3D deep CNN was both accurate and stable. This method is promising for evaluating aortic morphology automatically and alleviating the workload of radiologists in the near future.</description><identifier>ISSN: 1229-6929</identifier><identifier>EISSN: 2005-8330</identifier><language>kor</language><ispartof>Korean journal of radiology, 2021, Vol.22 (2), p.168-178</ispartof><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,885,4023</link.rule.ids></links><search><creatorcontrib>Yitong Yu</creatorcontrib><creatorcontrib>Yang Gao</creatorcontrib><creatorcontrib>Jianyong Wei</creatorcontrib><creatorcontrib>Fangzhou Liao</creatorcontrib><creatorcontrib>Qianjiang Xiao</creatorcontrib><creatorcontrib>Jie Zhang</creatorcontrib><creatorcontrib>Weihua Yin</creatorcontrib><creatorcontrib>Bin Lu</creatorcontrib><title>A Three-Dimensional Deep Convolutional Neural Network for Automatic Segmentation and Diameter Measurement of Type B Aortic Dissection</title><title>Korean journal of radiology</title><addtitle>Korean journal of radiology : official journal of the Korean Radiological Society</addtitle><description>Objective: To provide an automatic method for segmentation and diameter measurement of type B aortic dissection (TBAD). Materials and Methods: Aortic computed tomography angiographic images from 139 patients with TBAD were consecutively collected. We implemented a deep learning method based on a three-dimensional (3D) deep convolutional neural (CNN) network, which realizes automatic segmentation and measurement of the entire aorta (EA), true lumen (TL), and false lumen (FL). The accuracy, stability, and measurement time were compared between deep learning and manual methods. The intra- and inter-observer reproducibility of the manual method was also evaluated. Results: The mean dice coefficient scores were 0.958, 0.961, and 0.932 for EA, TL, and FL, respectively. There was a linear relationship between the reference standard and measurement by the manual and deep learning method (r = 0.964 and 0.991, respectively). The average measurement error of the deep learning method was less than that of the manual method (EA, 1.64% vs. 4.13%; TL, 2.46% vs. 11.67%; FL, 2.50% vs. 8.02%). Bland-Altman plots revealed that the deviations of the diameters between the deep learning method and the reference standard were -0.042 mm (-3.412 to 3.330 mm), -0.376 mm (-3.328 to 2.577 mm), and 0.026 mm (-3.040 to 3.092 mm) for EA, TL, and FL, respectively. For the manual method, the corresponding deviations were -0.166 mm (-1.419 to 1.086 mm), -0.050 mm (-0.970 to 1.070 mm), and -0.085 mm (-1.010 to 0.084 mm). Intra- and inter-observer differences were found in measurements with the manual method, but not with the deep learning method. The measurement time with the deep learning method was markedly shorter than with the manual method (21.7 ± 1.1 vs. 82.5 ± 16.1 minutes, p < 0.001). Conclusion: The performance of efficient segmentation and diameter measurement of TBADs based on the 3D deep CNN was both accurate and stable. This method is promising for evaluating aortic morphology automatically and alleviating the workload of radiologists in the near future.</description><issn>1229-6929</issn><issn>2005-8330</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNqNi0FuwjAQRa2KSk2hd5gNy0gTBwJepgSEWrUsyB5ZMGldEht5nFYcgHtDoAdg9aT_33sQkUQcx9M0xZ6IEilVnCmpnsQz8w-iVDgdReKUQ_ntieLCNGTZOKtrKIgOMHP219VtuE2f1Porwp_ze6ich7wNrtHBbGFNX5c46M4FbXdQGN1QIA8fpLn11L3gKiiPB4JXyJ3vssIw07aLBuKx0jXTyz_7YriYl7NlvDcczMbuuN685e8riTJJFE4mOMqycZbe650B4P9RuQ</recordid><startdate>2021</startdate><enddate>2021</enddate><creator>Yitong Yu</creator><creator>Yang Gao</creator><creator>Jianyong Wei</creator><creator>Fangzhou Liao</creator><creator>Qianjiang Xiao</creator><creator>Jie Zhang</creator><creator>Weihua Yin</creator><creator>Bin Lu</creator><scope>JDI</scope></search><sort><creationdate>2021</creationdate><title>A Three-Dimensional Deep Convolutional Neural Network for Automatic Segmentation and Diameter Measurement of Type B Aortic Dissection</title><author>Yitong Yu ; Yang Gao ; Jianyong Wei ; Fangzhou Liao ; Qianjiang Xiao ; Jie Zhang ; Weihua Yin ; Bin Lu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-kisti_ndsl_JAKO2021190770466563</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>kor</language><creationdate>2021</creationdate><toplevel>online_resources</toplevel><creatorcontrib>Yitong Yu</creatorcontrib><creatorcontrib>Yang Gao</creatorcontrib><creatorcontrib>Jianyong Wei</creatorcontrib><creatorcontrib>Fangzhou Liao</creatorcontrib><creatorcontrib>Qianjiang Xiao</creatorcontrib><creatorcontrib>Jie Zhang</creatorcontrib><creatorcontrib>Weihua Yin</creatorcontrib><creatorcontrib>Bin Lu</creatorcontrib><collection>KoreaScience</collection><jtitle>Korean journal of radiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yitong Yu</au><au>Yang Gao</au><au>Jianyong Wei</au><au>Fangzhou Liao</au><au>Qianjiang Xiao</au><au>Jie Zhang</au><au>Weihua Yin</au><au>Bin Lu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A Three-Dimensional Deep Convolutional Neural Network for Automatic Segmentation and Diameter Measurement of Type B Aortic Dissection</atitle><jtitle>Korean journal of radiology</jtitle><addtitle>Korean journal of radiology : official journal of the Korean Radiological Society</addtitle><date>2021</date><risdate>2021</risdate><volume>22</volume><issue>2</issue><spage>168</spage><epage>178</epage><pages>168-178</pages><issn>1229-6929</issn><eissn>2005-8330</eissn><abstract>Objective: To provide an automatic method for segmentation and diameter measurement of type B aortic dissection (TBAD). Materials and Methods: Aortic computed tomography angiographic images from 139 patients with TBAD were consecutively collected. We implemented a deep learning method based on a three-dimensional (3D) deep convolutional neural (CNN) network, which realizes automatic segmentation and measurement of the entire aorta (EA), true lumen (TL), and false lumen (FL). The accuracy, stability, and measurement time were compared between deep learning and manual methods. The intra- and inter-observer reproducibility of the manual method was also evaluated. Results: The mean dice coefficient scores were 0.958, 0.961, and 0.932 for EA, TL, and FL, respectively. There was a linear relationship between the reference standard and measurement by the manual and deep learning method (r = 0.964 and 0.991, respectively). The average measurement error of the deep learning method was less than that of the manual method (EA, 1.64% vs. 4.13%; TL, 2.46% vs. 11.67%; FL, 2.50% vs. 8.02%). Bland-Altman plots revealed that the deviations of the diameters between the deep learning method and the reference standard were -0.042 mm (-3.412 to 3.330 mm), -0.376 mm (-3.328 to 2.577 mm), and 0.026 mm (-3.040 to 3.092 mm) for EA, TL, and FL, respectively. For the manual method, the corresponding deviations were -0.166 mm (-1.419 to 1.086 mm), -0.050 mm (-0.970 to 1.070 mm), and -0.085 mm (-1.010 to 0.084 mm). Intra- and inter-observer differences were found in measurements with the manual method, but not with the deep learning method. The measurement time with the deep learning method was markedly shorter than with the manual method (21.7 ± 1.1 vs. 82.5 ± 16.1 minutes, p < 0.001). Conclusion: The performance of efficient segmentation and diameter measurement of TBADs based on the 3D deep CNN was both accurate and stable. This method is promising for evaluating aortic morphology automatically and alleviating the workload of radiologists in the near future.</abstract><oa>free_for_read</oa></addata></record> |
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title | A Three-Dimensional Deep Convolutional Neural Network for Automatic Segmentation and Diameter Measurement of Type B Aortic Dissection |
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