Genome-wide identification and analysis of expression pattern of REVEILLE transcription factors in castor (Ricinus communis L.)

• Published in: Horticulture, environment and biotechnology 2024, Environment, and Biotechnology, 65(3), , pp.453-463
• Main Authors: Wei, Xue, Zhang, Jixing, Wang, Nan, Sun, Mengdi, Ding, Xue, Xu, Hui, Yu, Xiumin, Yue, Wenran, Huo, Hongyan, Yu, Lili, Wang, Xiaoyu
• Format: Article
• Language: English
• Subjects: Agriculture; Biomedical and Life Sciences; circadian clocks; circadian rhythm; Circadian rhythms; Cold; cold stress; Diurnal; Gene expression; Gene sequencing; genes; Genomes; Genomic analysis; growth and development; Life Sciences; Nucleotide sequence; Pattern analysis; phylogeny; Physicochemical properties; Plant Breeding/Biotechnology; Plant Ecology; Plant growth; Plant Physiology; Plant species; Research Report; Ribonucleic acid; Ricinus communis; RNA; sequence alignment; species; Transcription factors; 농학
• ISSN: 2211-3452; 2211-3460
• DOI: 10.1007/s13580-023-00580-5

REVEILLE (RVEs) transcription factors play an important role in regulating circadian clock, plant growth and development, and stress responses. While RVEs have been identified in various plant species, comprehensive genome exploration and analysis of RVEs in castor ( Ricinus communis L.) have not been previously reported. In this study, we identified RcRVEs in the castor genome through sequence alignment and conducted an analysis encompassing gene structures, protein motifs, physicochemical properties, transcription patterns under cold stress, different tissues, and diurnal rhythm. A total of five RcRVEs were pinpointed in the castor genome. Evolutionary tree analysis categorized these RcRVEs into three distinct groups, implying that different RcRVEs may fulfill distinct biological functions. Furthermore, several abiotic stresses and hormone-responsive cis -acting elements were found in the promoters of the RcRVEs . RNA-sequencing (RNA-seq) analysis revealed that RcRVE1 and RcRVE7 were induced by cold stress and exhibited upregulation over time, indicating their involvement in regulating cold adaptation in castor plants. Five RcRVEs have notably higher expression levels in leaves compared to other tissues. The expression of all RcRVEs displayed diurnal rhythms under light/dark cycles. This study provides valuable insights into the potential functions of RcRVEs in regulating castor’s growth and development, and responses to cold stress.