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Evaluation of Xpert MTB/RIF assay performance in the diagnosis of abdominal tuberculosis
Background/Aims: The use of genetic probes for the diagnosis of pulmonary tuberculosis (TB) has been well described. However, the role of these assays in the diagnosis of intestinal tuberculosis is unclear. We therefore assessed the diagnostic utility of the Xpert Mycobacterium tuberculosis/rifampic...
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Published in: | Intestinal Research 2017, 15(2), , pp.187-194 |
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creator | Kumar, Suraj Bopanna, Sawan Kedia, Saurabh Mouli, Pratap Dhingra, Rajan Padhan, Rajesh Kohli, Mikashmi Chaubey, Jigyasa Sharma, Rohini Das, Prasenjit Dattagupta, S Makharia, Govind Sharma, SK Ahuja, Vineet |
description | Background/Aims: The use of genetic probes for the diagnosis of pulmonary tuberculosis (TB) has been well described. However, the role of these assays in the diagnosis of intestinal tuberculosis is unclear. We therefore assessed the diagnostic utility of the Xpert Mycobacterium tuberculosis/rifampicin (MTB/RIF) assay, and estimated the prevalence of multidrug-resistant (MDR) TB in the Indian population.Methods: Of 99 patients recruited, 37 had intestinal TB; two control groups comprised 43 with Crohn's disease (CD) and 19 with irritable bowel syndrome. Colonoscopy was performed before starting any therapy; mucosal biopsies were subjected to histopathology, acid-fast bacilli staining, Lowenstein-Jensen culture, and nucleic acid amplification testing using the Xpert MTB/RIF assay. Patients were followed up for 6 months to confirm the diagnosis and response to therapy. A composite reference standard was used for diagnosis of TB and assessment of the diagnostic utility of the Xpert MTB/RIF assay.Results: Of 37 intestinal TB patients, the Xpert MTB/RIF assay was positive in three of 37 (8.1%), but none had MDR-TB. The sensitivity, specificity, positive predictive value, and negative predictive value of the Xpert MTB/RIF assay was 8.1%, 100%, 100%, and, 64.2%, respectively.Conclusions: The Xpert MTB/RIF assay has low sensitivity but high specificity for intestinal TB, and may be helpful in endemic tuberculosis areas, when clinicians are faced with difficulty differentiating TB and CD. Based on the Xpert MTB/RIF assay, the prevalence of intestinal MDR-TB is low in the Indian population. |
doi_str_mv | 10.5217/ir.2017.15.2.187 |
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However, the role of these assays in the diagnosis of intestinal tuberculosis is unclear. We therefore assessed the diagnostic utility of the Xpert Mycobacterium tuberculosis/rifampicin (MTB/RIF) assay, and estimated the prevalence of multidrug-resistant (MDR) TB in the Indian population.Methods: Of 99 patients recruited, 37 had intestinal TB; two control groups comprised 43 with Crohn's disease (CD) and 19 with irritable bowel syndrome. Colonoscopy was performed before starting any therapy; mucosal biopsies were subjected to histopathology, acid-fast bacilli staining, Lowenstein-Jensen culture, and nucleic acid amplification testing using the Xpert MTB/RIF assay. Patients were followed up for 6 months to confirm the diagnosis and response to therapy. A composite reference standard was used for diagnosis of TB and assessment of the diagnostic utility of the Xpert MTB/RIF assay.Results: Of 37 intestinal TB patients, the Xpert MTB/RIF assay was positive in three of 37 (8.1%), but none had MDR-TB. The sensitivity, specificity, positive predictive value, and negative predictive value of the Xpert MTB/RIF assay was 8.1%, 100%, 100%, and, 64.2%, respectively.Conclusions: The Xpert MTB/RIF assay has low sensitivity but high specificity for intestinal TB, and may be helpful in endemic tuberculosis areas, when clinicians are faced with difficulty differentiating TB and CD. Based on the Xpert MTB/RIF assay, the prevalence of intestinal MDR-TB is low in the Indian population.</description><identifier>ISSN: 1598-9100</identifier><identifier>EISSN: 2288-1956</identifier><identifier>DOI: 10.5217/ir.2017.15.2.187</identifier><identifier>PMID: 28522948</identifier><language>eng</language><publisher>Korean Association for the Study of Intestinal Diseases</publisher><subject>Crohn disease ; Original ; Tuberculosis, multidrug-resistant ; Xpert MTB/RIF assay ; 내과학</subject><ispartof>Intestinal research, 2017, 15(2), , pp.187-194</ispartof><rights>Copyright 2017. Korean Association for the Study of Intestinal Diseases. 2017</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c496t-e8f34bdb759558d66c05a1e2b6664cc7499857f97f0228fc2750c10fc18ff8613</citedby><cites>FETCH-LOGICAL-c496t-e8f34bdb759558d66c05a1e2b6664cc7499857f97f0228fc2750c10fc18ff8613</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5430010/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5430010/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.kci.go.kr/kciportal/ci/sereArticleSearch/ciSereArtiView.kci?sereArticleSearchBean.artiId=ART002218877$$DAccess content in National Research Foundation of Korea (NRF)$$Hfree_for_read</backlink></links><search><creatorcontrib>Kumar, Suraj</creatorcontrib><creatorcontrib>Bopanna, Sawan</creatorcontrib><creatorcontrib>Kedia, Saurabh</creatorcontrib><creatorcontrib>Mouli, Pratap</creatorcontrib><creatorcontrib>Dhingra, Rajan</creatorcontrib><creatorcontrib>Padhan, Rajesh</creatorcontrib><creatorcontrib>Kohli, Mikashmi</creatorcontrib><creatorcontrib>Chaubey, Jigyasa</creatorcontrib><creatorcontrib>Sharma, Rohini</creatorcontrib><creatorcontrib>Das, Prasenjit</creatorcontrib><creatorcontrib>Dattagupta, S</creatorcontrib><creatorcontrib>Makharia, Govind</creatorcontrib><creatorcontrib>Sharma, SK</creatorcontrib><creatorcontrib>Ahuja, Vineet</creatorcontrib><title>Evaluation of Xpert MTB/RIF assay performance in the diagnosis of abdominal tuberculosis</title><title>Intestinal Research</title><description>Background/Aims: The use of genetic probes for the diagnosis of pulmonary tuberculosis (TB) has been well described. However, the role of these assays in the diagnosis of intestinal tuberculosis is unclear. We therefore assessed the diagnostic utility of the Xpert Mycobacterium tuberculosis/rifampicin (MTB/RIF) assay, and estimated the prevalence of multidrug-resistant (MDR) TB in the Indian population.Methods: Of 99 patients recruited, 37 had intestinal TB; two control groups comprised 43 with Crohn's disease (CD) and 19 with irritable bowel syndrome. Colonoscopy was performed before starting any therapy; mucosal biopsies were subjected to histopathology, acid-fast bacilli staining, Lowenstein-Jensen culture, and nucleic acid amplification testing using the Xpert MTB/RIF assay. Patients were followed up for 6 months to confirm the diagnosis and response to therapy. A composite reference standard was used for diagnosis of TB and assessment of the diagnostic utility of the Xpert MTB/RIF assay.Results: Of 37 intestinal TB patients, the Xpert MTB/RIF assay was positive in three of 37 (8.1%), but none had MDR-TB. The sensitivity, specificity, positive predictive value, and negative predictive value of the Xpert MTB/RIF assay was 8.1%, 100%, 100%, and, 64.2%, respectively.Conclusions: The Xpert MTB/RIF assay has low sensitivity but high specificity for intestinal TB, and may be helpful in endemic tuberculosis areas, when clinicians are faced with difficulty differentiating TB and CD. Based on the Xpert MTB/RIF assay, the prevalence of intestinal MDR-TB is low in the Indian population.</description><subject>Crohn disease</subject><subject>Original</subject><subject>Tuberculosis, multidrug-resistant</subject><subject>Xpert MTB/RIF assay</subject><subject>내과학</subject><issn>1598-9100</issn><issn>2288-1956</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNpVkc1LHEEQxZuQoIvx7nGuOczY1d99CRjRuKAEZAPemv5cO85OLz2zgv99ZndF8PSgXr0fVTyELgB3nIC8zLUjGGQHvCMdKPkFLQhRqgXNxVe0AK5VqwHjU3Q-jtlhxiQDTekJOiWKE6KZWqCnm1fb7-yUy9CU1DxtY52ah9Wvy8flbWPH0b418yiVurGDj00emuk5NiHb9VDGPO4z1oWyyYPtm2nnYvW7fu98R9-S7cd4_q5n6O_tzer6rr3_83t5fXXfeqbF1EaVKHPBSa45V0EIj7mFSJwQgnkvmdaKy6RlwvNzyRPJsQecPKiUlAB6hn4cuUNN5sVnU2w-6LqYl2quHldLA1RQCXzeXR53Q7H_zLbmja1vh8BhUOra2Dpl30ejAo3EpiCoCsxb55LmmHkA7QVJws6sn0fWduc2Mfg4TNX2n6CfnSE_zze9Gs4oxoBnAD4CfC3jWGP6yAI2-4JNrmZfsAFuiJkLpv8BdLKYQw</recordid><startdate>20170401</startdate><enddate>20170401</enddate><creator>Kumar, Suraj</creator><creator>Bopanna, Sawan</creator><creator>Kedia, Saurabh</creator><creator>Mouli, Pratap</creator><creator>Dhingra, Rajan</creator><creator>Padhan, Rajesh</creator><creator>Kohli, Mikashmi</creator><creator>Chaubey, Jigyasa</creator><creator>Sharma, Rohini</creator><creator>Das, Prasenjit</creator><creator>Dattagupta, S</creator><creator>Makharia, Govind</creator><creator>Sharma, SK</creator><creator>Ahuja, Vineet</creator><general>Korean Association for the Study of Intestinal Diseases</general><general>대한장연구학회</general><scope>AAYXX</scope><scope>CITATION</scope><scope>5PM</scope><scope>DOA</scope><scope>ACYCR</scope></search><sort><creationdate>20170401</creationdate><title>Evaluation of Xpert MTB/RIF assay performance in the diagnosis of abdominal tuberculosis</title><author>Kumar, Suraj ; Bopanna, Sawan ; Kedia, Saurabh ; Mouli, Pratap ; Dhingra, Rajan ; Padhan, Rajesh ; Kohli, Mikashmi ; Chaubey, Jigyasa ; Sharma, Rohini ; Das, Prasenjit ; Dattagupta, S ; Makharia, Govind ; Sharma, SK ; Ahuja, Vineet</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c496t-e8f34bdb759558d66c05a1e2b6664cc7499857f97f0228fc2750c10fc18ff8613</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Crohn disease</topic><topic>Original</topic><topic>Tuberculosis, multidrug-resistant</topic><topic>Xpert MTB/RIF assay</topic><topic>내과학</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kumar, Suraj</creatorcontrib><creatorcontrib>Bopanna, Sawan</creatorcontrib><creatorcontrib>Kedia, Saurabh</creatorcontrib><creatorcontrib>Mouli, Pratap</creatorcontrib><creatorcontrib>Dhingra, Rajan</creatorcontrib><creatorcontrib>Padhan, Rajesh</creatorcontrib><creatorcontrib>Kohli, Mikashmi</creatorcontrib><creatorcontrib>Chaubey, Jigyasa</creatorcontrib><creatorcontrib>Sharma, Rohini</creatorcontrib><creatorcontrib>Das, Prasenjit</creatorcontrib><creatorcontrib>Dattagupta, S</creatorcontrib><creatorcontrib>Makharia, Govind</creatorcontrib><creatorcontrib>Sharma, SK</creatorcontrib><creatorcontrib>Ahuja, Vineet</creatorcontrib><collection>CrossRef</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><collection>Korean Citation Index</collection><jtitle>Intestinal Research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kumar, Suraj</au><au>Bopanna, Sawan</au><au>Kedia, Saurabh</au><au>Mouli, Pratap</au><au>Dhingra, Rajan</au><au>Padhan, Rajesh</au><au>Kohli, Mikashmi</au><au>Chaubey, Jigyasa</au><au>Sharma, Rohini</au><au>Das, Prasenjit</au><au>Dattagupta, S</au><au>Makharia, Govind</au><au>Sharma, SK</au><au>Ahuja, Vineet</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Evaluation of Xpert MTB/RIF assay performance in the diagnosis of abdominal tuberculosis</atitle><jtitle>Intestinal Research</jtitle><date>2017-04-01</date><risdate>2017</risdate><volume>15</volume><issue>2</issue><spage>187</spage><epage>194</epage><pages>187-194</pages><issn>1598-9100</issn><eissn>2288-1956</eissn><abstract>Background/Aims: The use of genetic probes for the diagnosis of pulmonary tuberculosis (TB) has been well described. However, the role of these assays in the diagnosis of intestinal tuberculosis is unclear. We therefore assessed the diagnostic utility of the Xpert Mycobacterium tuberculosis/rifampicin (MTB/RIF) assay, and estimated the prevalence of multidrug-resistant (MDR) TB in the Indian population.Methods: Of 99 patients recruited, 37 had intestinal TB; two control groups comprised 43 with Crohn's disease (CD) and 19 with irritable bowel syndrome. Colonoscopy was performed before starting any therapy; mucosal biopsies were subjected to histopathology, acid-fast bacilli staining, Lowenstein-Jensen culture, and nucleic acid amplification testing using the Xpert MTB/RIF assay. Patients were followed up for 6 months to confirm the diagnosis and response to therapy. A composite reference standard was used for diagnosis of TB and assessment of the diagnostic utility of the Xpert MTB/RIF assay.Results: Of 37 intestinal TB patients, the Xpert MTB/RIF assay was positive in three of 37 (8.1%), but none had MDR-TB. The sensitivity, specificity, positive predictive value, and negative predictive value of the Xpert MTB/RIF assay was 8.1%, 100%, 100%, and, 64.2%, respectively.Conclusions: The Xpert MTB/RIF assay has low sensitivity but high specificity for intestinal TB, and may be helpful in endemic tuberculosis areas, when clinicians are faced with difficulty differentiating TB and CD. Based on the Xpert MTB/RIF assay, the prevalence of intestinal MDR-TB is low in the Indian population.</abstract><pub>Korean Association for the Study of Intestinal Diseases</pub><pmid>28522948</pmid><doi>10.5217/ir.2017.15.2.187</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Crohn disease Original Tuberculosis, multidrug-resistant Xpert MTB/RIF assay 내과학 |
title | Evaluation of Xpert MTB/RIF assay performance in the diagnosis of abdominal tuberculosis |
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