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The first mitochondrial genome for Brahmin moths (Brahmaeidae) and implications for the higher phylogeny of Bombycoidea
Bombycoidea comprises 10 families and 4723 species, and the phylogenetic relationships among families are still in debate. In this study, we have determined the complete mitochondrial genome (mitogenome) of Brahmaea porphyria. The 15,429-bp mitogenome contains a common set of 37 mitochondrial genes...
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Published in: | Journal of Asia-Pacific entomology 2018, 21(2), , pp.578-584 |
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description | Bombycoidea comprises 10 families and 4723 species, and the phylogenetic relationships among families are still in debate. In this study, we have determined the complete mitochondrial genome (mitogenome) of Brahmaea porphyria. The 15,429-bp mitogenome contains a common set of 37 mitochondrial genes including 13 protein-coding genes, 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs) and an inferred control region, and shares the conserved gene rearrangement (trnM-trnI-trnQ) in most ditrysian mitogenomes. Moreover, we analysed the secondary structure for all the tRNA genes of B. porphyria and the preference of codon usage in the PCGs of B. porphyria. The putative 373-bp control region (CR) possesses three types of conserved elements, including ATAGA, Ploy-T stretch, and microsatellite-like elements. A phylogenetic analysis among available Bombycoidea mitogenomes using the concatenated 37 mitochondrial genes appears to support the hypothesis of (Sphingidae+Bombycidae)+Saturniidae and the relatively basal phylogenetic position of Brahmaeidae within Bombycoidea.
[Display omitted]
•We determined the mitogenome of Brahmaea porphyria.•We analysed the evolutionary pattern for mitogenome of brahmin moths.•We reconstructed the mitogenomic phylogeny of Bombycoidea.•We estimated phylogenetic position of Brahmaeidae.•Our data could also provide useful information for population genetic of moths. |
doi_str_mv | 10.1016/j.aspen.2018.03.013 |
format | article |
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[Display omitted]
•We determined the mitogenome of Brahmaea porphyria.•We analysed the evolutionary pattern for mitogenome of brahmin moths.•We reconstructed the mitogenomic phylogeny of Bombycoidea.•We estimated phylogenetic position of Brahmaeidae.•Our data could also provide useful information for population genetic of moths.</description><identifier>ISSN: 1226-8615</identifier><identifier>EISSN: 1876-7990</identifier><identifier>DOI: 10.1016/j.aspen.2018.03.013</identifier><language>eng</language><publisher>Elsevier B.V</publisher><subject>Bombycoidea ; Brahmaea porphyria ; Brahmaeidae ; Mitochondrial genome ; Phylogeny ; 농수해양학</subject><ispartof>Journal of Asia-Pacific Entomology, 2018, 21(2), , pp.578-584</ispartof><rights>2018 Korean Society of Applied Entomology</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c337t-7885332d163b9e5e8afb9b70f5ac096647c2d02438b698c69e02eef28f5efd483</citedby><cites>FETCH-LOGICAL-c337t-7885332d163b9e5e8afb9b70f5ac096647c2d02438b698c69e02eef28f5efd483</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.kci.go.kr/kciportal/ci/sereArticleSearch/ciSereArtiView.kci?sereArticleSearchBean.artiId=ART002353186$$DAccess content in National Research Foundation of Korea (NRF)$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Hong-Li</creatorcontrib><creatorcontrib>Wang, Run-Mei</creatorcontrib><creatorcontrib>Han, Zhi-Ping</creatorcontrib><creatorcontrib>Zhang, Yong-Fang</creatorcontrib><creatorcontrib>Liu, Jian-Xia</creatorcontrib><title>The first mitochondrial genome for Brahmin moths (Brahmaeidae) and implications for the higher phylogeny of Bombycoidea</title><title>Journal of Asia-Pacific entomology</title><description>Bombycoidea comprises 10 families and 4723 species, and the phylogenetic relationships among families are still in debate. In this study, we have determined the complete mitochondrial genome (mitogenome) of Brahmaea porphyria. The 15,429-bp mitogenome contains a common set of 37 mitochondrial genes including 13 protein-coding genes, 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs) and an inferred control region, and shares the conserved gene rearrangement (trnM-trnI-trnQ) in most ditrysian mitogenomes. Moreover, we analysed the secondary structure for all the tRNA genes of B. porphyria and the preference of codon usage in the PCGs of B. porphyria. The putative 373-bp control region (CR) possesses three types of conserved elements, including ATAGA, Ploy-T stretch, and microsatellite-like elements. A phylogenetic analysis among available Bombycoidea mitogenomes using the concatenated 37 mitochondrial genes appears to support the hypothesis of (Sphingidae+Bombycidae)+Saturniidae and the relatively basal phylogenetic position of Brahmaeidae within Bombycoidea.
[Display omitted]
•We determined the mitogenome of Brahmaea porphyria.•We analysed the evolutionary pattern for mitogenome of brahmin moths.•We reconstructed the mitogenomic phylogeny of Bombycoidea.•We estimated phylogenetic position of Brahmaeidae.•Our data could also provide useful information for population genetic of moths.</description><subject>Bombycoidea</subject><subject>Brahmaea porphyria</subject><subject>Brahmaeidae</subject><subject>Mitochondrial genome</subject><subject>Phylogeny</subject><subject>농수해양학</subject><issn>1226-8615</issn><issn>1876-7990</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNp9kE9v2zAMxYViBdZl_QS76Nge7OpPLMuHHdqi7QIEKDCkZ0GWqJhJbAWSsSHfvo6z806PBPl7BB8hPzgrOePqYVfafIShFIzrksmScXlFbriuVVE3Dfsy1UKoQitefSXfct4xprjQ_Ib83XRAA6Y80h7H6Lo4-IT2QLcwxH4axUSfku16HGgfxy7Tu7m1gN7CPbWDp9gfD-jsiHHIMzBOnh1uO0j02J0OcfI60RjoU-zbk4vowX4n18EeMtz-0wX5eH3ZPP8q1u9vq-fHdeGkrMei1rqSUniuZNtABdqGtmlrFirrWKPUsnbCM7GUulWNdqoBJgCC0KGC4JdaLsj9xXdIwewdmmhx1m00-2Qef29WRtbL-cyCyMuuSzHnBMEcE_Y2nQxn5pyz2Zk5Z3PO2TBpppwn6ueFgumNPwjJZIcwOPCYwI3GR_wv_wkFF4jo</recordid><startdate>201806</startdate><enddate>201806</enddate><creator>Zhang, Hong-Li</creator><creator>Wang, Run-Mei</creator><creator>Han, Zhi-Ping</creator><creator>Zhang, Yong-Fang</creator><creator>Liu, Jian-Xia</creator><general>Elsevier B.V</general><general>한국응용곤충학회</general><scope>AAYXX</scope><scope>CITATION</scope><scope>ACYCR</scope></search><sort><creationdate>201806</creationdate><title>The first mitochondrial genome for Brahmin moths (Brahmaeidae) and implications for the higher phylogeny of Bombycoidea</title><author>Zhang, Hong-Li ; Wang, Run-Mei ; Han, Zhi-Ping ; Zhang, Yong-Fang ; Liu, Jian-Xia</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c337t-7885332d163b9e5e8afb9b70f5ac096647c2d02438b698c69e02eef28f5efd483</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Bombycoidea</topic><topic>Brahmaea porphyria</topic><topic>Brahmaeidae</topic><topic>Mitochondrial genome</topic><topic>Phylogeny</topic><topic>농수해양학</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Hong-Li</creatorcontrib><creatorcontrib>Wang, Run-Mei</creatorcontrib><creatorcontrib>Han, Zhi-Ping</creatorcontrib><creatorcontrib>Zhang, Yong-Fang</creatorcontrib><creatorcontrib>Liu, Jian-Xia</creatorcontrib><collection>CrossRef</collection><collection>Korean Citation Index</collection><jtitle>Journal of Asia-Pacific entomology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Hong-Li</au><au>Wang, Run-Mei</au><au>Han, Zhi-Ping</au><au>Zhang, Yong-Fang</au><au>Liu, Jian-Xia</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The first mitochondrial genome for Brahmin moths (Brahmaeidae) and implications for the higher phylogeny of Bombycoidea</atitle><jtitle>Journal of Asia-Pacific entomology</jtitle><date>2018-06</date><risdate>2018</risdate><volume>21</volume><issue>2</issue><spage>578</spage><epage>584</epage><pages>578-584</pages><issn>1226-8615</issn><eissn>1876-7990</eissn><abstract>Bombycoidea comprises 10 families and 4723 species, and the phylogenetic relationships among families are still in debate. In this study, we have determined the complete mitochondrial genome (mitogenome) of Brahmaea porphyria. The 15,429-bp mitogenome contains a common set of 37 mitochondrial genes including 13 protein-coding genes, 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs) and an inferred control region, and shares the conserved gene rearrangement (trnM-trnI-trnQ) in most ditrysian mitogenomes. Moreover, we analysed the secondary structure for all the tRNA genes of B. porphyria and the preference of codon usage in the PCGs of B. porphyria. The putative 373-bp control region (CR) possesses three types of conserved elements, including ATAGA, Ploy-T stretch, and microsatellite-like elements. A phylogenetic analysis among available Bombycoidea mitogenomes using the concatenated 37 mitochondrial genes appears to support the hypothesis of (Sphingidae+Bombycidae)+Saturniidae and the relatively basal phylogenetic position of Brahmaeidae within Bombycoidea.
[Display omitted]
•We determined the mitogenome of Brahmaea porphyria.•We analysed the evolutionary pattern for mitogenome of brahmin moths.•We reconstructed the mitogenomic phylogeny of Bombycoidea.•We estimated phylogenetic position of Brahmaeidae.•Our data could also provide useful information for population genetic of moths.</abstract><pub>Elsevier B.V</pub><doi>10.1016/j.aspen.2018.03.013</doi><tpages>7</tpages></addata></record> |
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subjects | Bombycoidea Brahmaea porphyria Brahmaeidae Mitochondrial genome Phylogeny 농수해양학 |
title | The first mitochondrial genome for Brahmin moths (Brahmaeidae) and implications for the higher phylogeny of Bombycoidea |
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