Loading…

Organization of three rRNA (rrn) operons from Sphingobium chungbukense DJ77

The nucleotide sequences of all three rRNA operons (rrnA, rrnB, and rrnC) of Sphingobium chungbukense DJ77 were determined. The three rrn operons have the same gene order (16S rRNA-tRNA∨Ile-tRNA∨Ala-23S rRNA-5S rRNA-tRNA∨fMet). The nucleotide sequences were identical over a 5,468 bp region spanning...

Full description

Saved in:
Bibliographic Details
Published in:The journal of microbiology 2008, 46(6), , pp.697-703
Main Authors: Yeon, S.M. (Chungbuk National University, Cheongju, Republic of Korea), Choi, B.S. (Seoul National University, Seoul, Republic of Korea), Kim, Y.C. (Chungbuk National University, Cheongju, Republic of Korea), E-mail: youngkim@chungbuk.ac.kr
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c424t-38270abb9a6b2c012be3b82ca0e337639660b79f9a89119a7971d7dab617320c3
cites cdi_FETCH-LOGICAL-c424t-38270abb9a6b2c012be3b82ca0e337639660b79f9a89119a7971d7dab617320c3
container_end_page 703
container_issue 6
container_start_page 697
container_title The journal of microbiology
container_volume 46
creator Yeon, S.M. (Chungbuk National University, Cheongju, Republic of Korea)
Choi, B.S. (Seoul National University, Seoul, Republic of Korea)
Kim, Y.C. (Chungbuk National University, Cheongju, Republic of Korea), E-mail: youngkim@chungbuk.ac.kr
description The nucleotide sequences of all three rRNA operons (rrnA, rrnB, and rrnC) of Sphingobium chungbukense DJ77 were determined. The three rrn operons have the same gene order (16S rRNA-tRNA∨Ile-tRNA∨Ala-23S rRNA-5S rRNA-tRNA∨fMet). The nucleotide sequences were identical over a 5,468 bp region spanning the 16S rRNA gene to the 5S rRNA gene. Variability was observed in the 5S rRNA-tRNA∨fMet spacer sequence of rrnB. The tRNA∨fMet gene sequences were identical except for two bases (T∧5794 and A∧5871 in rrnB, T∧5942 and A∧5956 in rrnA, but C∧5942 and G∧5956 in rrnC). Comparative sequence analyses of ribosomal RNA operons from DJ77 with those of the class Alphaproteobacteria, to which the genus Sphingobium belongs, reveal close evolutionary relationships with other members of the order Sphingomonadales.
doi_str_mv 10.1007/s12275-008-0193-0
format article
fullrecord <record><control><sourceid>proquest_nrf_k</sourceid><recordid>TN_cdi_nrf_kci_oai_kci_go_kr_ARTI_817649</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1896955131</sourcerecordid><originalsourceid>FETCH-LOGICAL-c424t-38270abb9a6b2c012be3b82ca0e337639660b79f9a89119a7971d7dab617320c3</originalsourceid><addsrcrecordid>eNp9kU1v1DAQhi0EoqXwAziAIg6oHAIzduKP46oUKK2otJSzZWedrLsbe2tvDuXX45KVKnHgNJbmed-R9RDyGuEjAohPGSkVbQ0ga0DFanhCjlEJXjOhmqflTWlbSynYEXmR8y0AR9bQ5-QIFYJoAI7J5XUaTPC_zd7HUMW-2q-Tc1Va_lhUpymFD1XcuRRDrvoUx-rnbu3DEK2fxqpbT2Gw08aF7KrP34V4SZ71Zpvdq8M8Ib--nN-cfauvrr9enC2u6q6hzb5mkgow1irDLe0AqXXMStoZcIwJzhTnYIXqlZEKURmhBK7EyliOglHo2Ak5nXtD6vWm8zoa_3cOUW-SXixvLrREwRtV0PczukvxbnJ5r0efO7fdmuDilDVXitKGYgHf_QPeximF8g1NqQKBEtsC4Qx1KeacXK93yY8m3WsE_WBEz0Z0MaIfjGgombeH4smObvWYOCgoAJ2BXFZhcOnx8v9a38yh3kRthuSzvlxSAAUArWzZHzDLm7I</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>229071815</pqid></control><display><type>article</type><title>Organization of three rRNA (rrn) operons from Sphingobium chungbukense DJ77</title><source>Springer Nature</source><creator>Yeon, S.M. (Chungbuk National University, Cheongju, Republic of Korea) ; Choi, B.S. (Seoul National University, Seoul, Republic of Korea) ; Kim, Y.C. (Chungbuk National University, Cheongju, Republic of Korea), E-mail: youngkim@chungbuk.ac.kr</creator><creatorcontrib>Yeon, S.M. (Chungbuk National University, Cheongju, Republic of Korea) ; Choi, B.S. (Seoul National University, Seoul, Republic of Korea) ; Kim, Y.C. (Chungbuk National University, Cheongju, Republic of Korea), E-mail: youngkim@chungbuk.ac.kr</creatorcontrib><description>The nucleotide sequences of all three rRNA operons (rrnA, rrnB, and rrnC) of Sphingobium chungbukense DJ77 were determined. The three rrn operons have the same gene order (16S rRNA-tRNA∨Ile-tRNA∨Ala-23S rRNA-5S rRNA-tRNA∨fMet). The nucleotide sequences were identical over a 5,468 bp region spanning the 16S rRNA gene to the 5S rRNA gene. Variability was observed in the 5S rRNA-tRNA∨fMet spacer sequence of rrnB. The tRNA∨fMet gene sequences were identical except for two bases (T∧5794 and A∧5871 in rrnB, T∧5942 and A∧5956 in rrnA, but C∧5942 and G∧5956 in rrnC). Comparative sequence analyses of ribosomal RNA operons from DJ77 with those of the class Alphaproteobacteria, to which the genus Sphingobium belongs, reveal close evolutionary relationships with other members of the order Sphingomonadales.</description><identifier>ISSN: 1225-8873</identifier><identifier>EISSN: 1976-3794</identifier><identifier>DOI: 10.1007/s12275-008-0193-0</identifier><identifier>PMID: 19107400</identifier><language>eng</language><publisher>Heidelberg: The Microbiological Society of Korea</publisher><subject>16S rRNA ; 23S rRNA ; 5S rRNA ; Alphaproteobacteria - genetics ; ARN ; Base Sequence ; Biomedical and Life Sciences ; Genomes ; Life Sciences ; Microbiology ; Molecular Sequence Data ; Phylogenetics ; Phylogeny ; RNA ; RNA, Ribosomal, 16S - genetics ; RNA, Ribosomal, 23S - genetics ; RNA, Ribosomal, 5S - genetics ; RNA, Transfer - genetics ; rrn operons ; rRNA Operon - genetics ; Sequence Analysis, DNA ; Sphingobium chungbukense DJ77 ; Sphingomonadaceae - genetics ; Sphingomonas - classification ; Sphingomonas - genetics ; tRNA ; 생물학</subject><ispartof>The Journal of Microbiology, 2008, 46(6), , pp.697-703</ispartof><rights>The Microbiological Society of Korea and Springer-Verlag Berlin Heidelber GmbH 2008</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c424t-38270abb9a6b2c012be3b82ca0e337639660b79f9a89119a7971d7dab617320c3</citedby><cites>FETCH-LOGICAL-c424t-38270abb9a6b2c012be3b82ca0e337639660b79f9a89119a7971d7dab617320c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19107400$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.kci.go.kr/kciportal/ci/sereArticleSearch/ciSereArtiView.kci?sereArticleSearchBean.artiId=ART001297225$$DAccess content in National Research Foundation of Korea (NRF)$$Hfree_for_read</backlink></links><search><creatorcontrib>Yeon, S.M. (Chungbuk National University, Cheongju, Republic of Korea)</creatorcontrib><creatorcontrib>Choi, B.S. (Seoul National University, Seoul, Republic of Korea)</creatorcontrib><creatorcontrib>Kim, Y.C. (Chungbuk National University, Cheongju, Republic of Korea), E-mail: youngkim@chungbuk.ac.kr</creatorcontrib><title>Organization of three rRNA (rrn) operons from Sphingobium chungbukense DJ77</title><title>The journal of microbiology</title><addtitle>J Microbiol</addtitle><addtitle>J Microbiol</addtitle><description>The nucleotide sequences of all three rRNA operons (rrnA, rrnB, and rrnC) of Sphingobium chungbukense DJ77 were determined. The three rrn operons have the same gene order (16S rRNA-tRNA∨Ile-tRNA∨Ala-23S rRNA-5S rRNA-tRNA∨fMet). The nucleotide sequences were identical over a 5,468 bp region spanning the 16S rRNA gene to the 5S rRNA gene. Variability was observed in the 5S rRNA-tRNA∨fMet spacer sequence of rrnB. The tRNA∨fMet gene sequences were identical except for two bases (T∧5794 and A∧5871 in rrnB, T∧5942 and A∧5956 in rrnA, but C∧5942 and G∧5956 in rrnC). Comparative sequence analyses of ribosomal RNA operons from DJ77 with those of the class Alphaproteobacteria, to which the genus Sphingobium belongs, reveal close evolutionary relationships with other members of the order Sphingomonadales.</description><subject>16S rRNA</subject><subject>23S rRNA</subject><subject>5S rRNA</subject><subject>Alphaproteobacteria - genetics</subject><subject>ARN</subject><subject>Base Sequence</subject><subject>Biomedical and Life Sciences</subject><subject>Genomes</subject><subject>Life Sciences</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>RNA, Ribosomal, 23S - genetics</subject><subject>RNA, Ribosomal, 5S - genetics</subject><subject>RNA, Transfer - genetics</subject><subject>rrn operons</subject><subject>rRNA Operon - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Sphingobium chungbukense DJ77</subject><subject>Sphingomonadaceae - genetics</subject><subject>Sphingomonas - classification</subject><subject>Sphingomonas - genetics</subject><subject>tRNA</subject><subject>생물학</subject><issn>1225-8873</issn><issn>1976-3794</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><recordid>eNp9kU1v1DAQhi0EoqXwAziAIg6oHAIzduKP46oUKK2otJSzZWedrLsbe2tvDuXX45KVKnHgNJbmed-R9RDyGuEjAohPGSkVbQ0ga0DFanhCjlEJXjOhmqflTWlbSynYEXmR8y0AR9bQ5-QIFYJoAI7J5XUaTPC_zd7HUMW-2q-Tc1Va_lhUpymFD1XcuRRDrvoUx-rnbu3DEK2fxqpbT2Gw08aF7KrP34V4SZ71Zpvdq8M8Ib--nN-cfauvrr9enC2u6q6hzb5mkgow1irDLe0AqXXMStoZcIwJzhTnYIXqlZEKURmhBK7EyliOglHo2Ak5nXtD6vWm8zoa_3cOUW-SXixvLrREwRtV0PczukvxbnJ5r0efO7fdmuDilDVXitKGYgHf_QPeximF8g1NqQKBEtsC4Qx1KeacXK93yY8m3WsE_WBEz0Z0MaIfjGgombeH4smObvWYOCgoAJ2BXFZhcOnx8v9a38yh3kRthuSzvlxSAAUArWzZHzDLm7I</recordid><startdate>20081201</startdate><enddate>20081201</enddate><creator>Yeon, S.M. (Chungbuk National University, Cheongju, Republic of Korea)</creator><creator>Choi, B.S. (Seoul National University, Seoul, Republic of Korea)</creator><creator>Kim, Y.C. (Chungbuk National University, Cheongju, Republic of Korea), E-mail: youngkim@chungbuk.ac.kr</creator><general>The Microbiological Society of Korea</general><general>Springer Nature B.V</general><general>한국미생물학회</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7TM</scope><scope>7TN</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>BKSAR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>F1W</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>H95</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>L.G</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PCBAR</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><scope>ACYCR</scope></search><sort><creationdate>20081201</creationdate><title>Organization of three rRNA (rrn) operons from Sphingobium chungbukense DJ77</title><author>Yeon, S.M. (Chungbuk National University, Cheongju, Republic of Korea) ; Choi, B.S. (Seoul National University, Seoul, Republic of Korea) ; Kim, Y.C. (Chungbuk National University, Cheongju, Republic of Korea), E-mail: youngkim@chungbuk.ac.kr</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c424t-38270abb9a6b2c012be3b82ca0e337639660b79f9a89119a7971d7dab617320c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>16S rRNA</topic><topic>23S rRNA</topic><topic>5S rRNA</topic><topic>Alphaproteobacteria - genetics</topic><topic>ARN</topic><topic>Base Sequence</topic><topic>Biomedical and Life Sciences</topic><topic>Genomes</topic><topic>Life Sciences</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>RNA, Ribosomal, 23S - genetics</topic><topic>RNA, Ribosomal, 5S - genetics</topic><topic>RNA, Transfer - genetics</topic><topic>rrn operons</topic><topic>rRNA Operon - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Sphingobium chungbukense DJ77</topic><topic>Sphingomonadaceae - genetics</topic><topic>Sphingomonas - classification</topic><topic>Sphingomonas - genetics</topic><topic>tRNA</topic><topic>생물학</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yeon, S.M. (Chungbuk National University, Cheongju, Republic of Korea)</creatorcontrib><creatorcontrib>Choi, B.S. (Seoul National University, Seoul, Republic of Korea)</creatorcontrib><creatorcontrib>Kim, Y.C. (Chungbuk National University, Cheongju, Republic of Korea), E-mail: youngkim@chungbuk.ac.kr</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Oceanic Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Health &amp; Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Earth, Atmospheric &amp; Aquatic Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Aquatic Science &amp; Fisheries Abstracts (ASFA) 1: Biological Sciences &amp; Living Resources</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>Aquatic Science &amp; Fisheries Abstracts (ASFA) Professional</collection><collection>ProQuest Biological Science Collection</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>PML(ProQuest Medical Library)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Earth, Atmospheric &amp; Aquatic Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>MEDLINE - Academic</collection><collection>Korean Citation Index</collection><jtitle>The journal of microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yeon, S.M. (Chungbuk National University, Cheongju, Republic of Korea)</au><au>Choi, B.S. (Seoul National University, Seoul, Republic of Korea)</au><au>Kim, Y.C. (Chungbuk National University, Cheongju, Republic of Korea), E-mail: youngkim@chungbuk.ac.kr</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Organization of three rRNA (rrn) operons from Sphingobium chungbukense DJ77</atitle><jtitle>The journal of microbiology</jtitle><stitle>J Microbiol</stitle><addtitle>J Microbiol</addtitle><date>2008-12-01</date><risdate>2008</risdate><volume>46</volume><issue>6</issue><spage>697</spage><epage>703</epage><pages>697-703</pages><issn>1225-8873</issn><eissn>1976-3794</eissn><abstract>The nucleotide sequences of all three rRNA operons (rrnA, rrnB, and rrnC) of Sphingobium chungbukense DJ77 were determined. The three rrn operons have the same gene order (16S rRNA-tRNA∨Ile-tRNA∨Ala-23S rRNA-5S rRNA-tRNA∨fMet). The nucleotide sequences were identical over a 5,468 bp region spanning the 16S rRNA gene to the 5S rRNA gene. Variability was observed in the 5S rRNA-tRNA∨fMet spacer sequence of rrnB. The tRNA∨fMet gene sequences were identical except for two bases (T∧5794 and A∧5871 in rrnB, T∧5942 and A∧5956 in rrnA, but C∧5942 and G∧5956 in rrnC). Comparative sequence analyses of ribosomal RNA operons from DJ77 with those of the class Alphaproteobacteria, to which the genus Sphingobium belongs, reveal close evolutionary relationships with other members of the order Sphingomonadales.</abstract><cop>Heidelberg</cop><pub>The Microbiological Society of Korea</pub><pmid>19107400</pmid><doi>10.1007/s12275-008-0193-0</doi><tpages>7</tpages></addata></record>
fulltext fulltext
identifier ISSN: 1225-8873
ispartof The Journal of Microbiology, 2008, 46(6), , pp.697-703
issn 1225-8873
1976-3794
language eng
recordid cdi_nrf_kci_oai_kci_go_kr_ARTI_817649
source Springer Nature
subjects 16S rRNA
23S rRNA
5S rRNA
Alphaproteobacteria - genetics
ARN
Base Sequence
Biomedical and Life Sciences
Genomes
Life Sciences
Microbiology
Molecular Sequence Data
Phylogenetics
Phylogeny
RNA
RNA, Ribosomal, 16S - genetics
RNA, Ribosomal, 23S - genetics
RNA, Ribosomal, 5S - genetics
RNA, Transfer - genetics
rrn operons
rRNA Operon - genetics
Sequence Analysis, DNA
Sphingobium chungbukense DJ77
Sphingomonadaceae - genetics
Sphingomonas - classification
Sphingomonas - genetics
tRNA
생물학
title Organization of three rRNA (rrn) operons from Sphingobium chungbukense DJ77
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-08T04%3A00%3A51IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_nrf_k&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Organization%20of%20three%20rRNA%20(rrn)%20operons%20from%20Sphingobium%20chungbukense%20DJ77&rft.jtitle=The%20journal%20of%20microbiology&rft.au=Yeon,%20S.M.%20(Chungbuk%20National%20University,%20Cheongju,%20Republic%20of%20Korea)&rft.date=2008-12-01&rft.volume=46&rft.issue=6&rft.spage=697&rft.epage=703&rft.pages=697-703&rft.issn=1225-8873&rft.eissn=1976-3794&rft_id=info:doi/10.1007/s12275-008-0193-0&rft_dat=%3Cproquest_nrf_k%3E1896955131%3C/proquest_nrf_k%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c424t-38270abb9a6b2c012be3b82ca0e337639660b79f9a89119a7971d7dab617320c3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=229071815&rft_id=info:pmid/19107400&rfr_iscdi=true