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Arthrobacter soli sp nov., a novel bacterium isolated from wastewater reservoir sediment
A novel Gram-positive bacterium, designated SYB2∨T, was isolated from wastewater reservoir sediment, and a polyphasic taxonomic study was conducted based on its morphological, physiological, and biochemical features, as well as the analysis of its 16S rRNA gene sequence. During the phylogenetic anal...
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Published in: | The journal of microbiology 2008, 46(1), , pp.40-44 |
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creator | Roh, S.W. (Korea University of Science and Technology, Daejeon, Republic of Korea) Sung, Y.B. (Environmental Research Department, Research Institute of Industrial Science and Technology, Gwangyang, Republic of Korea) Nam, Y.D. (Korea University of Science and Technology, Daejeon, Republic of Korea) Chang, H.W. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) Kim, K.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) Yoon, J.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) Jeon, C.O. (Gyeongsang National University, Jinju, Republic of Korea) Oh, H.M. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) Bae, J.W. (Korea University of Science and Technology, Daejeon, Republic of Korea), E-mail: baejw@kribb.re.kr |
description | A novel Gram-positive bacterium, designated SYB2∨T, was isolated from wastewater reservoir sediment, and a polyphasic taxonomic study was conducted based on its morphological, physiological, and biochemical features, as well as the analysis of its 16S rRNA gene sequence. During the phylogenetic analysis of the strain SYB2∨T, results of a 16S rRNA gene sequence analysis placed this bacterium in the genus Arthrobacter within the family Hicrococcaceae. SYB2∨T and Arthrobacter protophormiae ATCC 19271∨T, the most closely related species, both exhibited a 16S rRNA gene sequence similarity of 98.99%. The genomic DNA G+C content of the novel strain was found to be 62.0 mol%. The predominant fatty acid composition was anteiso-C∧15:0, anteiso-C∧17:0, iso-C∧16:0, and iso-C∧15:0. Analysis of 16S rRNA gene sequences and DNA-DNA relatedness, as well as physiological and biochemical tests, showed genotypic and phenotypic differences between strain SYB2∨T and other Arthrobacter species. The type strain of the novel species was identified as SYB2∨T (= KCTC 19291∨T = DSM 19449∨T). |
doi_str_mv | 10.1007/s12275-007-0239-8 |
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(Korea University of Science and Technology, Daejeon, Republic of Korea) ; Sung, Y.B. (Environmental Research Department, Research Institute of Industrial Science and Technology, Gwangyang, Republic of Korea) ; Nam, Y.D. (Korea University of Science and Technology, Daejeon, Republic of Korea) ; Chang, H.W. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) ; Kim, K.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) ; Yoon, J.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) ; Jeon, C.O. (Gyeongsang National University, Jinju, Republic of Korea) ; Oh, H.M. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) ; Bae, J.W. (Korea University of Science and Technology, Daejeon, Republic of Korea), E-mail: baejw@kribb.re.kr</creator><creatorcontrib>Roh, S.W. (Korea University of Science and Technology, Daejeon, Republic of Korea) ; Sung, Y.B. (Environmental Research Department, Research Institute of Industrial Science and Technology, Gwangyang, Republic of Korea) ; Nam, Y.D. (Korea University of Science and Technology, Daejeon, Republic of Korea) ; Chang, H.W. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) ; Kim, K.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) ; Yoon, J.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) ; Jeon, C.O. (Gyeongsang National University, Jinju, Republic of Korea) ; Oh, H.M. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) ; Bae, J.W. (Korea University of Science and Technology, Daejeon, Republic of Korea), E-mail: baejw@kribb.re.kr</creatorcontrib><description>A novel Gram-positive bacterium, designated SYB2∨T, was isolated from wastewater reservoir sediment, and a polyphasic taxonomic study was conducted based on its morphological, physiological, and biochemical features, as well as the analysis of its 16S rRNA gene sequence. During the phylogenetic analysis of the strain SYB2∨T, results of a 16S rRNA gene sequence analysis placed this bacterium in the genus Arthrobacter within the family Hicrococcaceae. SYB2∨T and Arthrobacter protophormiae ATCC 19271∨T, the most closely related species, both exhibited a 16S rRNA gene sequence similarity of 98.99%. The genomic DNA G+C content of the novel strain was found to be 62.0 mol%. The predominant fatty acid composition was anteiso-C∧15:0, anteiso-C∧17:0, iso-C∧16:0, and iso-C∧15:0. Analysis of 16S rRNA gene sequences and DNA-DNA relatedness, as well as physiological and biochemical tests, showed genotypic and phenotypic differences between strain SYB2∨T and other Arthrobacter species. The type strain of the novel species was identified as SYB2∨T (= KCTC 19291∨T = DSM 19449∨T).</description><identifier>ISSN: 1225-8873</identifier><identifier>EISSN: 1976-3794</identifier><identifier>DOI: 10.1007/s12275-007-0239-8</identifier><identifier>PMID: 18337691</identifier><language>eng</language><publisher>Heidelberg: The Microbiological Society of Korea</publisher><subject>Arthrobacter ; Arthrobacter - classification ; Arthrobacter - genetics ; Arthrobacter - isolation & purification ; Arthrobacter - physiology ; Arthrobacter protophormiae ; Arthrobacter soli sp nov ; Bacteria ; Base Composition ; Biochemical tests ; Biomedical and Life Sciences ; Chromatography ; Deoxyribonucleic acid ; DNA ; DNA, Ribosomal - genetics ; Fatty acids ; Fatty Acids - chemistry ; Genes, rRNA - genetics ; Geologic Sediments - microbiology ; Korea ; Life Sciences ; Microbiology ; Micrococcaceae ; Microorganisms ; Molecular Sequence Data ; Nucleic Acid Hybridization ; Phylogenetics ; Phylogeny ; Physiology ; Reservoirs ; RNA, Ribosomal, 16S - genetics ; Sediments ; Sequence Analysis, DNA ; TAXONOMIA ; TAXONOMIE ; TAXONOMY ; Waste Disposal, Fluid ; wastewater reservoir sediment ; 생물학</subject><ispartof>The Journal of Microbiology, 2008, 46(1), , pp.40-44</ispartof><rights>The Microbiological Society of Korea 2008</rights><rights>Springer 2008</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c455t-5023f2dc610c864422b430a4c90356d4bd5c0fc2d11944ef8231d2906699a5183</citedby><cites>FETCH-LOGICAL-c455t-5023f2dc610c864422b430a4c90356d4bd5c0fc2d11944ef8231d2906699a5183</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18337691$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.kci.go.kr/kciportal/ci/sereArticleSearch/ciSereArtiView.kci?sereArticleSearchBean.artiId=ART001247673$$DAccess content in National Research Foundation of Korea (NRF)$$Hfree_for_read</backlink></links><search><creatorcontrib>Roh, S.W. (Korea University of Science and Technology, Daejeon, Republic of Korea)</creatorcontrib><creatorcontrib>Sung, Y.B. (Environmental Research Department, Research Institute of Industrial Science and Technology, Gwangyang, Republic of Korea)</creatorcontrib><creatorcontrib>Nam, Y.D. (Korea University of Science and Technology, Daejeon, Republic of Korea)</creatorcontrib><creatorcontrib>Chang, H.W. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)</creatorcontrib><creatorcontrib>Kim, K.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)</creatorcontrib><creatorcontrib>Yoon, J.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)</creatorcontrib><creatorcontrib>Jeon, C.O. (Gyeongsang National University, Jinju, Republic of Korea)</creatorcontrib><creatorcontrib>Oh, H.M. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)</creatorcontrib><creatorcontrib>Bae, J.W. (Korea University of Science and Technology, Daejeon, Republic of Korea), E-mail: baejw@kribb.re.kr</creatorcontrib><title>Arthrobacter soli sp nov., a novel bacterium isolated from wastewater reservoir sediment</title><title>The journal of microbiology</title><addtitle>J Microbiol</addtitle><addtitle>J Microbiol</addtitle><description>A novel Gram-positive bacterium, designated SYB2∨T, was isolated from wastewater reservoir sediment, and a polyphasic taxonomic study was conducted based on its morphological, physiological, and biochemical features, as well as the analysis of its 16S rRNA gene sequence. During the phylogenetic analysis of the strain SYB2∨T, results of a 16S rRNA gene sequence analysis placed this bacterium in the genus Arthrobacter within the family Hicrococcaceae. SYB2∨T and Arthrobacter protophormiae ATCC 19271∨T, the most closely related species, both exhibited a 16S rRNA gene sequence similarity of 98.99%. The genomic DNA G+C content of the novel strain was found to be 62.0 mol%. The predominant fatty acid composition was anteiso-C∧15:0, anteiso-C∧17:0, iso-C∧16:0, and iso-C∧15:0. Analysis of 16S rRNA gene sequences and DNA-DNA relatedness, as well as physiological and biochemical tests, showed genotypic and phenotypic differences between strain SYB2∨T and other Arthrobacter species. The type strain of the novel species was identified as SYB2∨T (= KCTC 19291∨T = DSM 19449∨T).</description><subject>Arthrobacter</subject><subject>Arthrobacter - classification</subject><subject>Arthrobacter - genetics</subject><subject>Arthrobacter - isolation & purification</subject><subject>Arthrobacter - physiology</subject><subject>Arthrobacter protophormiae</subject><subject>Arthrobacter soli sp nov</subject><subject>Bacteria</subject><subject>Base Composition</subject><subject>Biochemical tests</subject><subject>Biomedical and Life Sciences</subject><subject>Chromatography</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fatty acids</subject><subject>Fatty Acids - chemistry</subject><subject>Genes, rRNA - genetics</subject><subject>Geologic Sediments - microbiology</subject><subject>Korea</subject><subject>Life Sciences</subject><subject>Microbiology</subject><subject>Micrococcaceae</subject><subject>Microorganisms</subject><subject>Molecular Sequence Data</subject><subject>Nucleic Acid Hybridization</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Physiology</subject><subject>Reservoirs</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sediments</subject><subject>Sequence Analysis, DNA</subject><subject>TAXONOMIA</subject><subject>TAXONOMIE</subject><subject>TAXONOMY</subject><subject>Waste Disposal, Fluid</subject><subject>wastewater reservoir sediment</subject><subject>생물학</subject><issn>1225-8873</issn><issn>1976-3794</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><recordid>eNqFkUtrFUEQhRtRTIz-ABfK4EJcOLGqn9PLS_ARDAghgrumb0_PtZOZ6ZvumQT_vT3OhYALXdWB-upUFYeQlwinCKA-ZKRUibrIGijTdfOIHKNWsmZK88dFUyrqplHsiDzL-RpAIuP0KTnChjElNR6TH5s0_Uxxa93kU5VjH6q8r8Z4d_q-skv1fbU2wzxUoQB28m3VpThU9zZP_t4ug8lnn-5iKBa-DYMfp-fkSWf77F8c6gn5_unj1dmX-uLb5_OzzUXtuBBTLcrhHW2dRHCN5JzSLWdgudPAhGz5thUOOkdbRM257xrKsKUapNTaivLHCXm3-o6pMzcumGjDn7qL5iaZzeXVuWlQqWZB367oPsXb2efJDCE73_d29HHORgHTUqL6L0gRUYFiBXzzF3gd5zSWfw2lGhEEFQXCFXIp5px8Z_YpDDb9MghmydGsOZpFLjma5dTXB-N5O_j2YeIQXAHoCuTSGnc-PWz-l-urdaiz0dhdCtl8vaQADQAHLtlvcsyuwA</recordid><startdate>20080201</startdate><enddate>20080201</enddate><creator>Roh, S.W. 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(Korea University of Science and Technology, Daejeon, Republic of Korea) ; Sung, Y.B. (Environmental Research Department, Research Institute of Industrial Science and Technology, Gwangyang, Republic of Korea) ; Nam, Y.D. (Korea University of Science and Technology, Daejeon, Republic of Korea) ; Chang, H.W. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) ; Kim, K.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) ; Yoon, J.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) ; Jeon, C.O. (Gyeongsang National University, Jinju, Republic of Korea) ; Oh, H.M. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea) ; Bae, J.W. 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(Korea University of Science and Technology, Daejeon, Republic of Korea)</au><au>Sung, Y.B. (Environmental Research Department, Research Institute of Industrial Science and Technology, Gwangyang, Republic of Korea)</au><au>Nam, Y.D. (Korea University of Science and Technology, Daejeon, Republic of Korea)</au><au>Chang, H.W. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)</au><au>Kim, K.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)</au><au>Yoon, J.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)</au><au>Jeon, C.O. (Gyeongsang National University, Jinju, Republic of Korea)</au><au>Oh, H.M. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)</au><au>Bae, J.W. (Korea University of Science and Technology, Daejeon, Republic of Korea), E-mail: baejw@kribb.re.kr</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Arthrobacter soli sp nov., a novel bacterium isolated from wastewater reservoir sediment</atitle><jtitle>The journal of microbiology</jtitle><stitle>J Microbiol</stitle><addtitle>J Microbiol</addtitle><date>2008-02-01</date><risdate>2008</risdate><volume>46</volume><issue>1</issue><spage>40</spage><epage>44</epage><pages>40-44</pages><issn>1225-8873</issn><eissn>1976-3794</eissn><abstract>A novel Gram-positive bacterium, designated SYB2∨T, was isolated from wastewater reservoir sediment, and a polyphasic taxonomic study was conducted based on its morphological, physiological, and biochemical features, as well as the analysis of its 16S rRNA gene sequence. During the phylogenetic analysis of the strain SYB2∨T, results of a 16S rRNA gene sequence analysis placed this bacterium in the genus Arthrobacter within the family Hicrococcaceae. SYB2∨T and Arthrobacter protophormiae ATCC 19271∨T, the most closely related species, both exhibited a 16S rRNA gene sequence similarity of 98.99%. The genomic DNA G+C content of the novel strain was found to be 62.0 mol%. The predominant fatty acid composition was anteiso-C∧15:0, anteiso-C∧17:0, iso-C∧16:0, and iso-C∧15:0. Analysis of 16S rRNA gene sequences and DNA-DNA relatedness, as well as physiological and biochemical tests, showed genotypic and phenotypic differences between strain SYB2∨T and other Arthrobacter species. The type strain of the novel species was identified as SYB2∨T (= KCTC 19291∨T = DSM 19449∨T).</abstract><cop>Heidelberg</cop><pub>The Microbiological Society of Korea</pub><pmid>18337691</pmid><doi>10.1007/s12275-007-0239-8</doi><tpages>5</tpages></addata></record> |
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ispartof | The Journal of Microbiology, 2008, 46(1), , pp.40-44 |
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language | eng |
recordid | cdi_nrf_kci_oai_kci_go_kr_ARTI_817788 |
source | Springer Nature |
subjects | Arthrobacter Arthrobacter - classification Arthrobacter - genetics Arthrobacter - isolation & purification Arthrobacter - physiology Arthrobacter protophormiae Arthrobacter soli sp nov Bacteria Base Composition Biochemical tests Biomedical and Life Sciences Chromatography Deoxyribonucleic acid DNA DNA, Ribosomal - genetics Fatty acids Fatty Acids - chemistry Genes, rRNA - genetics Geologic Sediments - microbiology Korea Life Sciences Microbiology Micrococcaceae Microorganisms Molecular Sequence Data Nucleic Acid Hybridization Phylogenetics Phylogeny Physiology Reservoirs RNA, Ribosomal, 16S - genetics Sediments Sequence Analysis, DNA TAXONOMIA TAXONOMIE TAXONOMY Waste Disposal, Fluid wastewater reservoir sediment 생물학 |
title | Arthrobacter soli sp nov., a novel bacterium isolated from wastewater reservoir sediment |
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