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Arthrobacter soli sp nov., a novel bacterium isolated from wastewater reservoir sediment

A novel Gram-positive bacterium, designated SYB2∨T, was isolated from wastewater reservoir sediment, and a polyphasic taxonomic study was conducted based on its morphological, physiological, and biochemical features, as well as the analysis of its 16S rRNA gene sequence. During the phylogenetic anal...

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Published in:The journal of microbiology 2008, 46(1), , pp.40-44
Main Authors: Roh, S.W. (Korea University of Science and Technology, Daejeon, Republic of Korea), Sung, Y.B. (Environmental Research Department, Research Institute of Industrial Science and Technology, Gwangyang, Republic of Korea), Nam, Y.D. (Korea University of Science and Technology, Daejeon, Republic of Korea), Chang, H.W. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea), Kim, K.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea), Yoon, J.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea), Jeon, C.O. (Gyeongsang National University, Jinju, Republic of Korea), Oh, H.M. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea), Bae, J.W. (Korea University of Science and Technology, Daejeon, Republic of Korea), E-mail: baejw@kribb.re.kr
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container_title The journal of microbiology
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creator Roh, S.W. (Korea University of Science and Technology, Daejeon, Republic of Korea)
Sung, Y.B. (Environmental Research Department, Research Institute of Industrial Science and Technology, Gwangyang, Republic of Korea)
Nam, Y.D. (Korea University of Science and Technology, Daejeon, Republic of Korea)
Chang, H.W. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)
Kim, K.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)
Yoon, J.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)
Jeon, C.O. (Gyeongsang National University, Jinju, Republic of Korea)
Oh, H.M. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)
Bae, J.W. (Korea University of Science and Technology, Daejeon, Republic of Korea), E-mail: baejw@kribb.re.kr
description A novel Gram-positive bacterium, designated SYB2∨T, was isolated from wastewater reservoir sediment, and a polyphasic taxonomic study was conducted based on its morphological, physiological, and biochemical features, as well as the analysis of its 16S rRNA gene sequence. During the phylogenetic analysis of the strain SYB2∨T, results of a 16S rRNA gene sequence analysis placed this bacterium in the genus Arthrobacter within the family Hicrococcaceae. SYB2∨T and Arthrobacter protophormiae ATCC 19271∨T, the most closely related species, both exhibited a 16S rRNA gene sequence similarity of 98.99%. The genomic DNA G+C content of the novel strain was found to be 62.0 mol%. The predominant fatty acid composition was anteiso-C∧15:0, anteiso-C∧17:0, iso-C∧16:0, and iso-C∧15:0. Analysis of 16S rRNA gene sequences and DNA-DNA relatedness, as well as physiological and biochemical tests, showed genotypic and phenotypic differences between strain SYB2∨T and other Arthrobacter species. The type strain of the novel species was identified as SYB2∨T (= KCTC 19291∨T = DSM 19449∨T).
doi_str_mv 10.1007/s12275-007-0239-8
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(Korea University of Science and Technology, Daejeon, Republic of Korea)</au><au>Sung, Y.B. (Environmental Research Department, Research Institute of Industrial Science and Technology, Gwangyang, Republic of Korea)</au><au>Nam, Y.D. (Korea University of Science and Technology, Daejeon, Republic of Korea)</au><au>Chang, H.W. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)</au><au>Kim, K.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)</au><au>Yoon, J.H. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)</au><au>Jeon, C.O. (Gyeongsang National University, Jinju, Republic of Korea)</au><au>Oh, H.M. (Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea)</au><au>Bae, J.W. (Korea University of Science and Technology, Daejeon, Republic of Korea), E-mail: baejw@kribb.re.kr</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Arthrobacter soli sp nov., a novel bacterium isolated from wastewater reservoir sediment</atitle><jtitle>The journal of microbiology</jtitle><stitle>J Microbiol</stitle><addtitle>J Microbiol</addtitle><date>2008-02-01</date><risdate>2008</risdate><volume>46</volume><issue>1</issue><spage>40</spage><epage>44</epage><pages>40-44</pages><issn>1225-8873</issn><eissn>1976-3794</eissn><abstract>A novel Gram-positive bacterium, designated SYB2∨T, was isolated from wastewater reservoir sediment, and a polyphasic taxonomic study was conducted based on its morphological, physiological, and biochemical features, as well as the analysis of its 16S rRNA gene sequence. During the phylogenetic analysis of the strain SYB2∨T, results of a 16S rRNA gene sequence analysis placed this bacterium in the genus Arthrobacter within the family Hicrococcaceae. SYB2∨T and Arthrobacter protophormiae ATCC 19271∨T, the most closely related species, both exhibited a 16S rRNA gene sequence similarity of 98.99%. The genomic DNA G+C content of the novel strain was found to be 62.0 mol%. The predominant fatty acid composition was anteiso-C∧15:0, anteiso-C∧17:0, iso-C∧16:0, and iso-C∧15:0. Analysis of 16S rRNA gene sequences and DNA-DNA relatedness, as well as physiological and biochemical tests, showed genotypic and phenotypic differences between strain SYB2∨T and other Arthrobacter species. The type strain of the novel species was identified as SYB2∨T (= KCTC 19291∨T = DSM 19449∨T).</abstract><cop>Heidelberg</cop><pub>The Microbiological Society of Korea</pub><pmid>18337691</pmid><doi>10.1007/s12275-007-0239-8</doi><tpages>5</tpages></addata></record>
fulltext fulltext
identifier ISSN: 1225-8873
ispartof The Journal of Microbiology, 2008, 46(1), , pp.40-44
issn 1225-8873
1976-3794
language eng
recordid cdi_nrf_kci_oai_kci_go_kr_ARTI_817788
source Springer Nature
subjects Arthrobacter
Arthrobacter - classification
Arthrobacter - genetics
Arthrobacter - isolation & purification
Arthrobacter - physiology
Arthrobacter protophormiae
Arthrobacter soli sp nov
Bacteria
Base Composition
Biochemical tests
Biomedical and Life Sciences
Chromatography
Deoxyribonucleic acid
DNA
DNA, Ribosomal - genetics
Fatty acids
Fatty Acids - chemistry
Genes, rRNA - genetics
Geologic Sediments - microbiology
Korea
Life Sciences
Microbiology
Micrococcaceae
Microorganisms
Molecular Sequence Data
Nucleic Acid Hybridization
Phylogenetics
Phylogeny
Physiology
Reservoirs
RNA, Ribosomal, 16S - genetics
Sediments
Sequence Analysis, DNA
TAXONOMIA
TAXONOMIE
TAXONOMY
Waste Disposal, Fluid
wastewater reservoir sediment
생물학
title Arthrobacter soli sp nov., a novel bacterium isolated from wastewater reservoir sediment
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