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Texture, Morphology, and Statistical Analysis to Differentiate Primary Brain Tumors on Two-Dimensional Magnetic Resonance Imaging Scans Using Artificial Intelligence Techniques
A primary brain tumor starts to grow from brain cells, and it occurs as a result of errors in the DNA of normal cells. Therefore, this study was carried out to analyze the two-dimensional (2D) texture, morphology, and statistical features of brain tumors and to perform a classification using artific...
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Published in: | Healthcare informatics research 2022, 28(1), , pp.46-57 |
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description | A primary brain tumor starts to grow from brain cells, and it occurs as a result of errors in the DNA of normal cells. Therefore, this study was carried out to analyze the two-dimensional (2D) texture, morphology, and statistical features of brain tumors and to perform a classification using artificial intelligence (AI) techniques.
AI techniques can help radiologists to diagnose primary brain tumors without using any invasive measurement techniques. In this paper, we focused on deep learning (DL) and machine learning (ML) techniques for texture, morphological, and statistical feature classification of three tumor types (namely, glioma, meningioma, and pituitary). T1-weighted magnetic resonance imaging (MRI) 2D scans were used for analysis and classification (multiclass and binary). A total of 102 features were calculated for each tumor, and the 20 most significant features were selected using the three-step feature selection method, which included removing duplicate features, Pearson correlations, and recursive feature elimination.
From the predicted results of multiclass and binary classification, a long short-term memory binary classification (glioma vs. meningioma) showed the best performance, with an average accuracy, recall, precision, F1-score, and kappa coefficient of 97.7%, 97.2%, 97.5%, 97.0%, and 94.7%, respectively.
The early diagnosis of primary brain tumors is very important because it can be the key to effective treatment. Therefore, this research presents a method for early diagnoses by effectively classifying three types of primary brain tumors. |
doi_str_mv | 10.4258/hir.2022.28.1.46 |
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AI techniques can help radiologists to diagnose primary brain tumors without using any invasive measurement techniques. In this paper, we focused on deep learning (DL) and machine learning (ML) techniques for texture, morphological, and statistical feature classification of three tumor types (namely, glioma, meningioma, and pituitary). T1-weighted magnetic resonance imaging (MRI) 2D scans were used for analysis and classification (multiclass and binary). A total of 102 features were calculated for each tumor, and the 20 most significant features were selected using the three-step feature selection method, which included removing duplicate features, Pearson correlations, and recursive feature elimination.
From the predicted results of multiclass and binary classification, a long short-term memory binary classification (glioma vs. meningioma) showed the best performance, with an average accuracy, recall, precision, F1-score, and kappa coefficient of 97.7%, 97.2%, 97.5%, 97.0%, and 94.7%, respectively.
The early diagnosis of primary brain tumors is very important because it can be the key to effective treatment. Therefore, this research presents a method for early diagnoses by effectively classifying three types of primary brain tumors.</description><identifier>ISSN: 2093-3681</identifier><identifier>ISSN: 2093-369X</identifier><identifier>EISSN: 2093-369X</identifier><identifier>DOI: 10.4258/hir.2022.28.1.46</identifier><identifier>PMID: 35172090</identifier><language>eng</language><publisher>Korea (South): Korean Society of Medical Informatics</publisher><subject>brain tumor ; classification ; deep learning ; machine learning ; magnetic resonance imaging ; Original ; 예방의학</subject><ispartof>Healthcare Informatics Research, 2022, 28(1), , pp.46-57</ispartof><rights>2022 The Korean Society of Medical Informatics 2022</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c496t-dc50b73f3a814ba9b871e260169c04a6fcef9e82e9cd142f5279af5abdc05bda3</citedby><cites>FETCH-LOGICAL-c496t-dc50b73f3a814ba9b871e260169c04a6fcef9e82e9cd142f5279af5abdc05bda3</cites><orcidid>0000-0002-6036-6915 ; 0000-0002-7013-4720 ; 0000-0003-0943-7084 ; 0000-0002-1372-7052 ; 0000-0002-5399-7647</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8850171/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8850171/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35172090$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.kci.go.kr/kciportal/ci/sereArticleSearch/ciSereArtiView.kci?sereArticleSearchBean.artiId=ART002809853$$DAccess content in National Research Foundation of Korea (NRF)$$Hfree_for_read</backlink></links><search><creatorcontrib>Bhattacharjee, Subrata</creatorcontrib><creatorcontrib>Prakash, Deekshitha</creatorcontrib><creatorcontrib>Kim, Cho-Hee</creatorcontrib><creatorcontrib>Kim, Hee-Cheol</creatorcontrib><creatorcontrib>Choi, Heung-Kook</creatorcontrib><title>Texture, Morphology, and Statistical Analysis to Differentiate Primary Brain Tumors on Two-Dimensional Magnetic Resonance Imaging Scans Using Artificial Intelligence Techniques</title><title>Healthcare informatics research</title><addtitle>Healthc Inform Res</addtitle><description>A primary brain tumor starts to grow from brain cells, and it occurs as a result of errors in the DNA of normal cells. Therefore, this study was carried out to analyze the two-dimensional (2D) texture, morphology, and statistical features of brain tumors and to perform a classification using artificial intelligence (AI) techniques.
AI techniques can help radiologists to diagnose primary brain tumors without using any invasive measurement techniques. In this paper, we focused on deep learning (DL) and machine learning (ML) techniques for texture, morphological, and statistical feature classification of three tumor types (namely, glioma, meningioma, and pituitary). T1-weighted magnetic resonance imaging (MRI) 2D scans were used for analysis and classification (multiclass and binary). A total of 102 features were calculated for each tumor, and the 20 most significant features were selected using the three-step feature selection method, which included removing duplicate features, Pearson correlations, and recursive feature elimination.
From the predicted results of multiclass and binary classification, a long short-term memory binary classification (glioma vs. meningioma) showed the best performance, with an average accuracy, recall, precision, F1-score, and kappa coefficient of 97.7%, 97.2%, 97.5%, 97.0%, and 94.7%, respectively.
The early diagnosis of primary brain tumors is very important because it can be the key to effective treatment. Therefore, this research presents a method for early diagnoses by effectively classifying three types of primary brain tumors.</description><subject>brain tumor</subject><subject>classification</subject><subject>deep learning</subject><subject>machine learning</subject><subject>magnetic resonance imaging</subject><subject>Original</subject><subject>예방의학</subject><issn>2093-3681</issn><issn>2093-369X</issn><issn>2093-369X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNpVUk1vEzEQXSEQrUrvnJCPIDXB9u463gtS2vIRqRWoTSVu1qx3vHG7awd7A-Rf8RPxJiWivng0897z-Oll2WtGpwUv5fuVDVNOOZ9yOWXTQjzLjjmt8kkuqu_PD7VkR9lpjPc0nZLOuJQvs6O8ZLM0p8fZnyX-HjYBz8i1D-uV73y7PSPgGnI7wGDjYDV0ZO6g20YbyeDJpTUGA7rBwoDkW7A9hC05D2AdWW56HyLxqfrlJ5e2RxetT2RyDa3DJEZuMKaG00gWPbTWteRWg4vkLo71PAzWWG0TY-EG7Drb4ohdol45-2OD8VX2wkAX8fTxPsnuPn1cXnyZXH39vLiYX010UYlh0uiS1rPc5CBZUUNVyxlDLigTlaYFCKPRVCg5VrphBTcln1VgSqgbTcu6gfwke7fXdcGoB22VB7u7W68egprfLBeqqrisKE_YxR7beLhX670lO8Ku4UOrIH1Md6gag0I0IgcGdUEbLmmNBZdpT0Z5kYuk9WGvtd7UPTY6GR2geyL6dOLsKu30U0lZUjZjSeDto0Dwo2GD6m3UyUpw6DdRccErWYpC0gSle6gOPsaA5vAMo2rMmEoZU2PGFJeKqWJc783_6x0I_xKV_wVT9tIr</recordid><startdate>20220101</startdate><enddate>20220101</enddate><creator>Bhattacharjee, Subrata</creator><creator>Prakash, Deekshitha</creator><creator>Kim, Cho-Hee</creator><creator>Kim, Hee-Cheol</creator><creator>Choi, Heung-Kook</creator><general>Korean Society of Medical Informatics</general><general>The Korean Society of Medical Informatics</general><general>대한의료정보학회</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><scope>ACYCR</scope><orcidid>https://orcid.org/0000-0002-6036-6915</orcidid><orcidid>https://orcid.org/0000-0002-7013-4720</orcidid><orcidid>https://orcid.org/0000-0003-0943-7084</orcidid><orcidid>https://orcid.org/0000-0002-1372-7052</orcidid><orcidid>https://orcid.org/0000-0002-5399-7647</orcidid></search><sort><creationdate>20220101</creationdate><title>Texture, Morphology, and Statistical Analysis to Differentiate Primary Brain Tumors on Two-Dimensional Magnetic Resonance Imaging Scans Using Artificial Intelligence Techniques</title><author>Bhattacharjee, Subrata ; Prakash, Deekshitha ; Kim, Cho-Hee ; Kim, Hee-Cheol ; Choi, Heung-Kook</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c496t-dc50b73f3a814ba9b871e260169c04a6fcef9e82e9cd142f5279af5abdc05bda3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>brain tumor</topic><topic>classification</topic><topic>deep learning</topic><topic>machine learning</topic><topic>magnetic resonance imaging</topic><topic>Original</topic><topic>예방의학</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bhattacharjee, Subrata</creatorcontrib><creatorcontrib>Prakash, Deekshitha</creatorcontrib><creatorcontrib>Kim, Cho-Hee</creatorcontrib><creatorcontrib>Kim, Hee-Cheol</creatorcontrib><creatorcontrib>Choi, Heung-Kook</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><collection>Korean Citation Index</collection><jtitle>Healthcare informatics research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bhattacharjee, Subrata</au><au>Prakash, Deekshitha</au><au>Kim, Cho-Hee</au><au>Kim, Hee-Cheol</au><au>Choi, Heung-Kook</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Texture, Morphology, and Statistical Analysis to Differentiate Primary Brain Tumors on Two-Dimensional Magnetic Resonance Imaging Scans Using Artificial Intelligence Techniques</atitle><jtitle>Healthcare informatics research</jtitle><addtitle>Healthc Inform Res</addtitle><date>2022-01-01</date><risdate>2022</risdate><volume>28</volume><issue>1</issue><spage>46</spage><epage>57</epage><pages>46-57</pages><issn>2093-3681</issn><issn>2093-369X</issn><eissn>2093-369X</eissn><abstract>A primary brain tumor starts to grow from brain cells, and it occurs as a result of errors in the DNA of normal cells. Therefore, this study was carried out to analyze the two-dimensional (2D) texture, morphology, and statistical features of brain tumors and to perform a classification using artificial intelligence (AI) techniques.
AI techniques can help radiologists to diagnose primary brain tumors without using any invasive measurement techniques. In this paper, we focused on deep learning (DL) and machine learning (ML) techniques for texture, morphological, and statistical feature classification of three tumor types (namely, glioma, meningioma, and pituitary). T1-weighted magnetic resonance imaging (MRI) 2D scans were used for analysis and classification (multiclass and binary). A total of 102 features were calculated for each tumor, and the 20 most significant features were selected using the three-step feature selection method, which included removing duplicate features, Pearson correlations, and recursive feature elimination.
From the predicted results of multiclass and binary classification, a long short-term memory binary classification (glioma vs. meningioma) showed the best performance, with an average accuracy, recall, precision, F1-score, and kappa coefficient of 97.7%, 97.2%, 97.5%, 97.0%, and 94.7%, respectively.
The early diagnosis of primary brain tumors is very important because it can be the key to effective treatment. Therefore, this research presents a method for early diagnoses by effectively classifying three types of primary brain tumors.</abstract><cop>Korea (South)</cop><pub>Korean Society of Medical Informatics</pub><pmid>35172090</pmid><doi>10.4258/hir.2022.28.1.46</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0002-6036-6915</orcidid><orcidid>https://orcid.org/0000-0002-7013-4720</orcidid><orcidid>https://orcid.org/0000-0003-0943-7084</orcidid><orcidid>https://orcid.org/0000-0002-1372-7052</orcidid><orcidid>https://orcid.org/0000-0002-5399-7647</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | brain tumor classification deep learning machine learning magnetic resonance imaging Original 예방의학 |
title | Texture, Morphology, and Statistical Analysis to Differentiate Primary Brain Tumors on Two-Dimensional Magnetic Resonance Imaging Scans Using Artificial Intelligence Techniques |
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