Investigation of the enzymatic mechanism of yeast orotidine-5'-monophosphate decarboxylase using sup 13 C kinetic isotope effects

• Published in: Biochemistry (Easton) 1991-06, Vol.30:25
• Main Authors: Smiley, J.A., Bell, J.B., Jones, M.E., Paneth, P., O'Leary, M.H.
• Format: Article
• Language: English
• Subjects: 550201 - Biochemistry- Tracer Techniques; BASIC BIOLOGICAL SCIENCES; BIOCHEMICAL REACTION KINETICS; BIOCHEMISTRY; CARBON 13; CARBON ISOTOPES; CARBON-CARBON LYASES; CARBOXY-LYASES; CHEMISTRY; DECARBOXYLASES; ENZYME ACTIVITY; ENZYMES; EUMYCOTA; EVEN-ODD NUCLEI; FUNGI; ISOTOPE EFFECTS; ISOTOPES; KINETICS; LIGHT NUCLEI; LYASES; MICROORGANISMS; NUCLEI; NUCLEOTIDES; ORGANIC COMPOUNDS; PH VALUE; PLANTS; REACTION KINETICS; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE; STABLE ISOTOPES; YEASTS
• ISSN: 0006-2960; 1520-4995
• DOI: 10.1021/bi00239a020

Orotidine-5'-monophosphate decarboxylase (ODCase) from Saccharomyces cerevisiae displays an observed {sup 13}C kinetic isotope effect of 1.0247 {plus minus} 0.0008 at 25 C, pH 6.8. The observed isotope effect is sensitive to changes in the reaction medium, such as pH, temperature, or glycerol content. The value of 1.0494 {plus minus} 0.0006 measured at pH 4.0, 25 C, is not altered significantly by temperature or glycerol, and thus the intrinsic isotope effect for the reaction is apparently being observed under these conditions and decarboxylation is almost entirely rate-determining. These data require a catalytic mechanism with freely reversible binding and one in which a very limited contribution to the overall rate is made by chemical steps preceding decarboxylation; the zwitterion mechanism of Beak and Siegel, which involves only protonation of the pyrimidine ring, is such a mechanism. With use of an intrinsic isotope effect of 1.05, a partitioning factor of less than unity is calculated for ODCase at pH 6.0, 25 C. A quantitative kinetic analysis using this result excludes the possibility of an enzymatic mechanism involving covalent attachment of an enzyme nucleophile to C-5 of the pyrimidine ring. These data fit a kinetic model in which an enzyme proton necessary for catalysis is titrated at high pH, thus providing evidence for the catalytic mechanism of Beak and Siegal.