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Characterization of the methanotrophic bacterial community present in a trichloroethylene-contaminated subsurface groundwater site
Groundwater, contaminated with trichloroethylene (TCE) and tetrachloroethylene (PCE), was collected from 13 monitoring wells at Area M on the U.S. Department of Energy Savannah River Site near Aiken, S.C. Filtered groundwater samples were enriched with methane, leading to the isolation of 25 methano...
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Published in: | Applied and Environmental Microbiology 1993-08, Vol.59 (8), p.2380-2387 |
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description | Groundwater, contaminated with trichloroethylene (TCE) and tetrachloroethylene (PCE), was collected from 13 monitoring wells at Area M on the U.S. Department of Energy Savannah River Site near Aiken, S.C. Filtered groundwater samples were enriched with methane, leading to the isolation of 25 methanotrophic isolates. The phospholipid fatty acid profiles of all the isolates were dominated by 18:1 omega 8c (60 to 80%), a signature lipid for group II methanotrophs. Subsequent phenotypic testing showed that most of the strains were members of the genus Methylosinus and one isolate was a member of the genus Methylocystis. Most of the methanotroph isolates exhibited soluble methane monooxygenase (sMMO) activity. This was presumptively indicated by the naphthalene oxidation assay and confirmed by hybridization with a gene probe encoding the mmoB gene and by cell extract assays. TCE was degraded at various rates by most of the sMMO-producing isolates, whereas PCE was not degraded. Savannah River Area M and other groundwaters, pristine and polluted, were found to support sMMO activity when supplemented with nutrients and then inoculated with Methylosinus trichosporium OB3b. The maximal sMMO-specific activity obtained in the various groundwaters ranged from 41 to 67% compared with maximal rates obtained in copper-free nitrate mineral salts media. This study partially supports the hypothesis that stimulation of indigenous methanotrophic communities can be efficacious for removal of chlorinated aliphatic hydrocarbons from subsurface sites and that the removal can be mediated by sMMO. |
doi_str_mv | 10.1128/aem.59.8.2380-2387.1993 |
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Congress. House. Committee on Public Works and Transportation</creatorcontrib><description>Groundwater, contaminated with trichloroethylene (TCE) and tetrachloroethylene (PCE), was collected from 13 monitoring wells at Area M on the U.S. Department of Energy Savannah River Site near Aiken, S.C. Filtered groundwater samples were enriched with methane, leading to the isolation of 25 methanotrophic isolates. The phospholipid fatty acid profiles of all the isolates were dominated by 18:1 omega 8c (60 to 80%), a signature lipid for group II methanotrophs. Subsequent phenotypic testing showed that most of the strains were members of the genus Methylosinus and one isolate was a member of the genus Methylocystis. Most of the methanotroph isolates exhibited soluble methane monooxygenase (sMMO) activity. This was presumptively indicated by the naphthalene oxidation assay and confirmed by hybridization with a gene probe encoding the mmoB gene and by cell extract assays. TCE was degraded at various rates by most of the sMMO-producing isolates, whereas PCE was not degraded. Savannah River Area M and other groundwaters, pristine and polluted, were found to support sMMO activity when supplemented with nutrients and then inoculated with Methylosinus trichosporium OB3b. The maximal sMMO-specific activity obtained in the various groundwaters ranged from 41 to 67% compared with maximal rates obtained in copper-free nitrate mineral salts media. This study partially supports the hypothesis that stimulation of indigenous methanotrophic communities can be efficacious for removal of chlorinated aliphatic hydrocarbons from subsurface sites and that the removal can be mediated by sMMO.</description><identifier>ISSN: 0099-2240</identifier><identifier>EISSN: 1098-5336</identifier><identifier>DOI: 10.1128/aem.59.8.2380-2387.1993</identifier><identifier>PMID: 8368829</identifier><identifier>CODEN: AEMIDF</identifier><language>eng</language><publisher>United States: American Society for Microbiology</publisher><subject>560300 -- Chemicals Metabolism & Toxicology ; actividad enzimatica ; activite enzymatique ; aguas subterraneas ; BACTERIA ; bacteria gram negativa ; bacterie gram negatif ; Base Sequence ; biodegradacion ; BIODEGRADATION ; Biodegradation, Environmental ; carolina del sur ; caroline du sud ; CHEMICAL REACTIONS ; CHLORINATED ALIPHATIC HYDROCARBONS ; CONTAMINATION ; DECOMPOSITION ; DNA Probes ; DNA, Bacterial - genetics ; DRINKING WATER ; eau souterraine ; Ecology ; ENVIRONMENTAL SCIENCES ; enzymic activity ; Freshwater ; GENES ; Genes, Bacterial ; gram negative bacteria ; GROUND WATER ; Groundwater ; HALOGENATED ALIPHATIC HYDROCARBONS ; HYDROGEN COMPOUNDS ; Methane ; METHANOTROPHIC BACTERIA ; Methylococcaceae - genetics ; Methylococcaceae - isolation & purification ; Methylococcaceae - metabolism ; methylocystis ; methylosinus ; MICROORGANISMS ; Molecular Sequence Data ; ORGANIC CHLORINE COMPOUNDS ; ORGANIC COMPOUNDS ; ORGANIC HALOGEN COMPOUNDS ; oxidoreductases ; oxidorreductasas ; oxydoreductase ; OXYGEN COMPOUNDS ; Oxygenases - genetics ; Oxygenases - metabolism ; pollution de l' eau ; polucion del agua ; RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTANT EFFECTS ON LIVING ORGS. AND BIOL. MAT ; REMEDIAL ACTION ; SEDIMENTS ; south carolina ; SPECIES DIVERSITY ; Tetrachloroethylene - metabolism ; Trichloroethylene - metabolism ; WATER 540220 -- Environment, Terrestrial-- Chemicals Monitoring & Transport-- (1990-) ; Water Microbiology ; Water Pollutants, Chemical - metabolism ; water pollution</subject><ispartof>Applied and Environmental Microbiology, 1993-08, Vol.59 (8), p.2380-2387</ispartof><rights>Copyright American Society for Microbiology Aug 1993</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a719t-3802d815728a64b641fc5b0e206835e9beb79b7793d2d23f14622b72f5b104023</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC182295/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC182295/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,3187,3188,27923,27924,53790,53792</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/8368829$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/6121727$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Bowman, J P</creatorcontrib><creatorcontrib>Jiménez, L</creatorcontrib><creatorcontrib>Rosario, I</creatorcontrib><creatorcontrib>Hazen, T C</creatorcontrib><creatorcontrib>Sayler, G S</creatorcontrib><creatorcontrib>United States. Congress. House. Committee on Public Works and Transportation</creatorcontrib><title>Characterization of the methanotrophic bacterial community present in a trichloroethylene-contaminated subsurface groundwater site</title><title>Applied and Environmental Microbiology</title><addtitle>Appl Environ Microbiol</addtitle><description>Groundwater, contaminated with trichloroethylene (TCE) and tetrachloroethylene (PCE), was collected from 13 monitoring wells at Area M on the U.S. Department of Energy Savannah River Site near Aiken, S.C. Filtered groundwater samples were enriched with methane, leading to the isolation of 25 methanotrophic isolates. The phospholipid fatty acid profiles of all the isolates were dominated by 18:1 omega 8c (60 to 80%), a signature lipid for group II methanotrophs. Subsequent phenotypic testing showed that most of the strains were members of the genus Methylosinus and one isolate was a member of the genus Methylocystis. Most of the methanotroph isolates exhibited soluble methane monooxygenase (sMMO) activity. This was presumptively indicated by the naphthalene oxidation assay and confirmed by hybridization with a gene probe encoding the mmoB gene and by cell extract assays. TCE was degraded at various rates by most of the sMMO-producing isolates, whereas PCE was not degraded. Savannah River Area M and other groundwaters, pristine and polluted, were found to support sMMO activity when supplemented with nutrients and then inoculated with Methylosinus trichosporium OB3b. The maximal sMMO-specific activity obtained in the various groundwaters ranged from 41 to 67% compared with maximal rates obtained in copper-free nitrate mineral salts media. This study partially supports the hypothesis that stimulation of indigenous methanotrophic communities can be efficacious for removal of chlorinated aliphatic hydrocarbons from subsurface sites and that the removal can be mediated by sMMO.</description><subject>560300 -- Chemicals Metabolism & Toxicology</subject><subject>actividad enzimatica</subject><subject>activite enzymatique</subject><subject>aguas subterraneas</subject><subject>BACTERIA</subject><subject>bacteria gram negativa</subject><subject>bacterie gram negatif</subject><subject>Base Sequence</subject><subject>biodegradacion</subject><subject>BIODEGRADATION</subject><subject>Biodegradation, Environmental</subject><subject>carolina del sur</subject><subject>caroline du sud</subject><subject>CHEMICAL REACTIONS</subject><subject>CHLORINATED ALIPHATIC HYDROCARBONS</subject><subject>CONTAMINATION</subject><subject>DECOMPOSITION</subject><subject>DNA Probes</subject><subject>DNA, Bacterial - genetics</subject><subject>DRINKING WATER</subject><subject>eau souterraine</subject><subject>Ecology</subject><subject>ENVIRONMENTAL SCIENCES</subject><subject>enzymic activity</subject><subject>Freshwater</subject><subject>GENES</subject><subject>Genes, Bacterial</subject><subject>gram negative bacteria</subject><subject>GROUND WATER</subject><subject>Groundwater</subject><subject>HALOGENATED ALIPHATIC HYDROCARBONS</subject><subject>HYDROGEN COMPOUNDS</subject><subject>Methane</subject><subject>METHANOTROPHIC BACTERIA</subject><subject>Methylococcaceae - genetics</subject><subject>Methylococcaceae - isolation & purification</subject><subject>Methylococcaceae - metabolism</subject><subject>methylocystis</subject><subject>methylosinus</subject><subject>MICROORGANISMS</subject><subject>Molecular Sequence Data</subject><subject>ORGANIC CHLORINE COMPOUNDS</subject><subject>ORGANIC COMPOUNDS</subject><subject>ORGANIC HALOGEN COMPOUNDS</subject><subject>oxidoreductases</subject><subject>oxidorreductasas</subject><subject>oxydoreductase</subject><subject>OXYGEN COMPOUNDS</subject><subject>Oxygenases - genetics</subject><subject>Oxygenases - metabolism</subject><subject>pollution de l' eau</subject><subject>polucion del agua</subject><subject>RADIATION, THERMAL, AND OTHER ENVIRON. 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MAT</subject><subject>REMEDIAL ACTION</subject><subject>SEDIMENTS</subject><subject>south carolina</subject><subject>SPECIES DIVERSITY</subject><subject>Tetrachloroethylene - metabolism</subject><subject>Trichloroethylene - metabolism</subject><subject>WATER 540220 -- Environment, Terrestrial-- Chemicals Monitoring & Transport-- (1990-)</subject><subject>Water Microbiology</subject><subject>Water Pollutants, Chemical - metabolism</subject><subject>water pollution</subject><issn>0099-2240</issn><issn>1098-5336</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1993</creationdate><recordtype>article</recordtype><recordid>eNqFkjuP1DAUhSMEWpaFnwAYCroMfiR-FBRoxEtaiQK2thznZuJVYg-2w2oo-eV4lNHAVjTXku93rn2uTlW9JHhDCJVvDcybVm3khjKJ61LEhijFHlSXBCtZt4zxh9UlxkrVlDb4cfUkpVuMcYO5vKguJONSUnVZ_d6OJhqbIbpfJrvgURhQHgHNkEfjQ45hPzqLupUxE7Jhnhfv8gHtIyTwGTmPDMrR2XEKMRTdYQIPtQ0-m9l5k6FHaenSEgdjAe1iWHx_V64jSi7D0-rRYKYEz07nVXXz8cP37ef6-uunL9v317URROW6-KS9JK2g0vCm4w0ZbNthoMURa0F10AnVCaFYT3vKBtJwSjtBh7YjxTZlV9W7de5-6Wbobfl6NJPeRzebeNDBOH2_492od-GnJpJS1Rb961UfUnY62fJ1OxaTHmzWnFAiqCjQm9MjMfxYIGU9u2RhmoyHsCRNOFeqFez_IOOqeJR_nz2Dt2GJvmxKU9wqylmrCiRWyMaQUoThbItgfQyMLoHRrdJSHwNzLEIfA1OUz__dyll3Skjpv1r7o9uNdy6CNmm-P60wL1ZmMEGbXXRJ33wr0xuMJcNcsT9nstST</recordid><startdate>19930801</startdate><enddate>19930801</enddate><creator>Bowman, J P</creator><creator>Jiménez, L</creator><creator>Rosario, I</creator><creator>Hazen, T C</creator><creator>Sayler, G S</creator><general>American Society for Microbiology</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7SN</scope><scope>7SS</scope><scope>7ST</scope><scope>7T7</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>SOI</scope><scope>7QH</scope><scope>7TV</scope><scope>7UA</scope><scope>F1W</scope><scope>H97</scope><scope>L.G</scope><scope>OTOTI</scope><scope>5PM</scope></search><sort><creationdate>19930801</creationdate><title>Characterization of the methanotrophic bacterial community present in a trichloroethylene-contaminated subsurface groundwater site</title><author>Bowman, J P ; Jiménez, L ; Rosario, I ; Hazen, T C ; Sayler, G S</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a719t-3802d815728a64b641fc5b0e206835e9beb79b7793d2d23f14622b72f5b104023</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1993</creationdate><topic>560300 -- Chemicals Metabolism & Toxicology</topic><topic>actividad enzimatica</topic><topic>activite enzymatique</topic><topic>aguas subterraneas</topic><topic>BACTERIA</topic><topic>bacteria gram negativa</topic><topic>bacterie gram negatif</topic><topic>Base Sequence</topic><topic>biodegradacion</topic><topic>BIODEGRADATION</topic><topic>Biodegradation, Environmental</topic><topic>carolina del sur</topic><topic>caroline du sud</topic><topic>CHEMICAL REACTIONS</topic><topic>CHLORINATED ALIPHATIC HYDROCARBONS</topic><topic>CONTAMINATION</topic><topic>DECOMPOSITION</topic><topic>DNA Probes</topic><topic>DNA, Bacterial - genetics</topic><topic>DRINKING WATER</topic><topic>eau souterraine</topic><topic>Ecology</topic><topic>ENVIRONMENTAL SCIENCES</topic><topic>enzymic activity</topic><topic>Freshwater</topic><topic>GENES</topic><topic>Genes, Bacterial</topic><topic>gram negative bacteria</topic><topic>GROUND WATER</topic><topic>Groundwater</topic><topic>HALOGENATED ALIPHATIC HYDROCARBONS</topic><topic>HYDROGEN COMPOUNDS</topic><topic>Methane</topic><topic>METHANOTROPHIC BACTERIA</topic><topic>Methylococcaceae - genetics</topic><topic>Methylococcaceae - isolation & purification</topic><topic>Methylococcaceae - metabolism</topic><topic>methylocystis</topic><topic>methylosinus</topic><topic>MICROORGANISMS</topic><topic>Molecular Sequence Data</topic><topic>ORGANIC CHLORINE COMPOUNDS</topic><topic>ORGANIC COMPOUNDS</topic><topic>ORGANIC HALOGEN COMPOUNDS</topic><topic>oxidoreductases</topic><topic>oxidorreductasas</topic><topic>oxydoreductase</topic><topic>OXYGEN COMPOUNDS</topic><topic>Oxygenases - genetics</topic><topic>Oxygenases - metabolism</topic><topic>pollution de l' eau</topic><topic>polucion del agua</topic><topic>RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTANT EFFECTS ON LIVING ORGS. AND BIOL. MAT</topic><topic>REMEDIAL ACTION</topic><topic>SEDIMENTS</topic><topic>south carolina</topic><topic>SPECIES DIVERSITY</topic><topic>Tetrachloroethylene - metabolism</topic><topic>Trichloroethylene - metabolism</topic><topic>WATER 540220 -- Environment, Terrestrial-- Chemicals Monitoring & Transport-- (1990-)</topic><topic>Water Microbiology</topic><topic>Water Pollutants, Chemical - metabolism</topic><topic>water pollution</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bowman, J P</creatorcontrib><creatorcontrib>Jiménez, L</creatorcontrib><creatorcontrib>Rosario, I</creatorcontrib><creatorcontrib>Hazen, T C</creatorcontrib><creatorcontrib>Sayler, G S</creatorcontrib><creatorcontrib>United States. Congress. House. 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Congress. House. Committee on Public Works and Transportation</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization of the methanotrophic bacterial community present in a trichloroethylene-contaminated subsurface groundwater site</atitle><jtitle>Applied and Environmental Microbiology</jtitle><addtitle>Appl Environ Microbiol</addtitle><date>1993-08-01</date><risdate>1993</risdate><volume>59</volume><issue>8</issue><spage>2380</spage><epage>2387</epage><pages>2380-2387</pages><issn>0099-2240</issn><eissn>1098-5336</eissn><coden>AEMIDF</coden><abstract>Groundwater, contaminated with trichloroethylene (TCE) and tetrachloroethylene (PCE), was collected from 13 monitoring wells at Area M on the U.S. Department of Energy Savannah River Site near Aiken, S.C. Filtered groundwater samples were enriched with methane, leading to the isolation of 25 methanotrophic isolates. The phospholipid fatty acid profiles of all the isolates were dominated by 18:1 omega 8c (60 to 80%), a signature lipid for group II methanotrophs. Subsequent phenotypic testing showed that most of the strains were members of the genus Methylosinus and one isolate was a member of the genus Methylocystis. Most of the methanotroph isolates exhibited soluble methane monooxygenase (sMMO) activity. This was presumptively indicated by the naphthalene oxidation assay and confirmed by hybridization with a gene probe encoding the mmoB gene and by cell extract assays. TCE was degraded at various rates by most of the sMMO-producing isolates, whereas PCE was not degraded. Savannah River Area M and other groundwaters, pristine and polluted, were found to support sMMO activity when supplemented with nutrients and then inoculated with Methylosinus trichosporium OB3b. The maximal sMMO-specific activity obtained in the various groundwaters ranged from 41 to 67% compared with maximal rates obtained in copper-free nitrate mineral salts media. This study partially supports the hypothesis that stimulation of indigenous methanotrophic communities can be efficacious for removal of chlorinated aliphatic hydrocarbons from subsurface sites and that the removal can be mediated by sMMO.</abstract><cop>United States</cop><pub>American Society for Microbiology</pub><pmid>8368829</pmid><doi>10.1128/aem.59.8.2380-2387.1993</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
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subjects | 560300 -- Chemicals Metabolism & Toxicology actividad enzimatica activite enzymatique aguas subterraneas BACTERIA bacteria gram negativa bacterie gram negatif Base Sequence biodegradacion BIODEGRADATION Biodegradation, Environmental carolina del sur caroline du sud CHEMICAL REACTIONS CHLORINATED ALIPHATIC HYDROCARBONS CONTAMINATION DECOMPOSITION DNA Probes DNA, Bacterial - genetics DRINKING WATER eau souterraine Ecology ENVIRONMENTAL SCIENCES enzymic activity Freshwater GENES Genes, Bacterial gram negative bacteria GROUND WATER Groundwater HALOGENATED ALIPHATIC HYDROCARBONS HYDROGEN COMPOUNDS Methane METHANOTROPHIC BACTERIA Methylococcaceae - genetics Methylococcaceae - isolation & purification Methylococcaceae - metabolism methylocystis methylosinus MICROORGANISMS Molecular Sequence Data ORGANIC CHLORINE COMPOUNDS ORGANIC COMPOUNDS ORGANIC HALOGEN COMPOUNDS oxidoreductases oxidorreductasas oxydoreductase OXYGEN COMPOUNDS Oxygenases - genetics Oxygenases - metabolism pollution de l' eau polucion del agua RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTANT EFFECTS ON LIVING ORGS. AND BIOL. MAT REMEDIAL ACTION SEDIMENTS south carolina SPECIES DIVERSITY Tetrachloroethylene - metabolism Trichloroethylene - metabolism WATER 540220 -- Environment, Terrestrial-- Chemicals Monitoring & Transport-- (1990-) Water Microbiology Water Pollutants, Chemical - metabolism water pollution |
title | Characterization of the methanotrophic bacterial community present in a trichloroethylene-contaminated subsurface groundwater site |
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