Genome Sequence and Analysis of the Soil Cellulolytic ActinomyceteThermobifida fusca

Thermobifida fusca is a moderately thermophilic soilbacterium that belongs to Actinobacteria. 3 It is a major degrader ofplant cell walls and has been used as a model organism for the study of 4secreted, thermostable cellulases. The complete genome sequence showedthat T. fusca has a 5 single circula...

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Bibliographic Details
Published in:Journal of bacteriology 2007-02, Vol.189 (6)
Main Authors: Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia, Anderson, Iain, Land, Miriam, DiBartolo, Genevieve, Martinez, Michele, Lapidus, Alla, Lucas, Susan, Copeland, Alex, Richardson, Paul, Wilson,David B., Kyrpides, Nikos
Format: Article
Language:English
Subjects:
59
CARBOHYDRATES
CELLULASE
CHROMOSOMES
ENZYMES
GLYCOSIDES
GLYCOSYL HYDROLASES
HYDROLASES
IMPORTS
PHYSIOLOGY
PLANT CELLS
PROTEINS
REGULATIONS
RNA
SECRETION
SOILS
Thermobifida fusca cellulase xylanase genome
TRANSLOCATION
TRANSPORT
XYLANASE
XYLANS
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Summary:Thermobifida fusca is a moderately thermophilic soilbacterium that belongs to Actinobacteria. 3 It is a major degrader ofplant cell walls and has been used as a model organism for the study of 4secreted, thermostable cellulases. The complete genome sequence showedthat T. fusca has a 5 single circular chromosome of 3642249 bp predictedto encode 3117 proteins and 65 RNA6 species with a coding densityof 85percent. Genome analysis revealed the existence of 29 putative 7glycoside hydrolases in addition to the previously identified cellulasesand xylanases. The 8 glycosyl hydrolases include enzymes predicted toexhibit mainly dextran/starch and xylan 9 degrading functions. T. fuscapossesses two protein secretion systems: the sec general secretion 10system and the twin-arginine translocation system. Several of thesecreted cellulases have 11 sequence signatures indicating theirsecretion may be mediated by the twin-arginine12 translocation system. T.fusca has extensive transport systems for import of carbohydrates 13coupled to transcriptional regulators controlling the expression of thetransporters and14 glycosylhydrolases. In addition to providing anoverview of the physiology of a soil 15 actinomycete, this study presentsinsights on the transcriptional regulation and secretion of16 cellulaseswhich may facilitate the industrial exploitation of thesesystems.
ISSN:0021-9193
1098-5530
DOI:10.1128/JB.01899-06