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Isolation and Characterization of Four Gram-PositiveNickel-Tolerant Microorganisms from Contaminated Riparian Sediments
Microbial communities from riparian sediments contaminatedwith high levels of Ni and U were examined for metal-tolerantmicroorganisms. Isolation of four aerobic Ni-tolerant, Gram-positiveheterotrophic bacteria indicated selection pressure from Ni. Theseisolates were identified as Arthrobacter oxydan...
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Published in: | Microbial ecology 2006-08, Vol.53 (3) |
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creator | Van Nostrand, Joy D. Khijniak, Tatiana V. Gentry, Terry J. Novak, Michelle T. Sowder, Andrew G. Zhou, Jizhong Z. Bertsch, PaulM Morris, Pamela J. |
description | Microbial communities from riparian sediments contaminatedwith high levels of Ni and U were examined for metal-tolerantmicroorganisms. Isolation of four aerobic Ni-tolerant, Gram-positiveheterotrophic bacteria indicated selection pressure from Ni. Theseisolates were identified as Arthrobacter oxydans NR-1, Streptomycesgalbus NR-2, Streptomyces aureofaciens NR-3, and Kitasatosporacystarginea NR-4 based on partial 16S rDNA sequences. A functional genemicroarray containing gene probes for functions associated withbiogeochemical cycling, metal homeostasis, and organic contaminantdegradation showed little overlap among the four isolates. Fifteen of thegenes were detected in all four isolates with only two of these relatedto metal resistance, specifically to tellurium. Each of the four isolatesalso displayed resistance to at least one of six antibiotics tested, withresistance to kanamycin, gentamycin, and ciprofloxacin observed in atleast two of the isolates. Further characterization of S. aureofaciensNR-3 and K. cystarginea NR-4 demonstrated that both isolates expressed Nitolerance constitutively. In addition, both were able to grow in higherconcentrations of Ni at pH 6 as compared to pH 7 (42.6 and 8.5 mM Ni atpH 6 and 7, respectively). Tolerance to Cd, Co, and Zn was also examinedin these two isolates; a similar pH-dependent metal tolerance wasobserved when grown with Co and Zn. Neither isolate was tolerant to Cd.These findings suggest that Ni is exerting a selection pressure at thissite for metal-resistant actinomycetes. |
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Isolation of four aerobic Ni-tolerant, Gram-positiveheterotrophic bacteria indicated selection pressure from Ni. Theseisolates were identified as Arthrobacter oxydans NR-1, Streptomycesgalbus NR-2, Streptomyces aureofaciens NR-3, and Kitasatosporacystarginea NR-4 based on partial 16S rDNA sequences. A functional genemicroarray containing gene probes for functions associated withbiogeochemical cycling, metal homeostasis, and organic contaminantdegradation showed little overlap among the four isolates. Fifteen of thegenes were detected in all four isolates with only two of these relatedto metal resistance, specifically to tellurium. Each of the four isolatesalso displayed resistance to at least one of six antibiotics tested, withresistance to kanamycin, gentamycin, and ciprofloxacin observed in atleast two of the isolates. Further characterization of S. aureofaciensNR-3 and K. cystarginea NR-4 demonstrated that both isolates expressed Nitolerance constitutively. In addition, both were able to grow in higherconcentrations of Ni at pH 6 as compared to pH 7 (42.6 and 8.5 mM Ni atpH 6 and 7, respectively). Tolerance to Cd, Co, and Zn was also examinedin these two isolates; a similar pH-dependent metal tolerance wasobserved when grown with Co and Zn. Neither isolate was tolerant to Cd.These findings suggest that Ni is exerting a selection pressure at thissite for metal-resistant actinomycetes.</description><identifier>ISSN: 0095-3628</identifier><identifier>EISSN: 1432-184X</identifier><language>eng</language><publisher>United States</publisher><subject>ANTIBIOTICS ; BACTERIA ; Bioremediation, Extremophiles, Field Studies, StressResponse ; COMMUNITIES ; FUNCTIONALS ; GENES ; HOMEOSTASIS ; MICROORGANISMS ; PROBES ; SEDIMENTS ; STREPTOMYCES ; TELLURIUM ; TOLERANCE</subject><ispartof>Microbial ecology, 2006-08, Vol.53 (3)</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,885</link.rule.ids><backlink>$$Uhttps://www.osti.gov/biblio/932594$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Van Nostrand, Joy D.</creatorcontrib><creatorcontrib>Khijniak, Tatiana V.</creatorcontrib><creatorcontrib>Gentry, Terry J.</creatorcontrib><creatorcontrib>Novak, Michelle T.</creatorcontrib><creatorcontrib>Sowder, Andrew G.</creatorcontrib><creatorcontrib>Zhou, Jizhong Z.</creatorcontrib><creatorcontrib>Bertsch, PaulM</creatorcontrib><creatorcontrib>Morris, Pamela J.</creatorcontrib><creatorcontrib>COLLABORATION - Center for CoastalEnvironmental Health and Biomolecular Research and Hollings MarineLaboratory, U.S. National Oceanic and Atmospheric Administration,Charleston, SC 29412, USA</creatorcontrib><title>Isolation and Characterization of Four Gram-PositiveNickel-Tolerant Microorganisms from Contaminated Riparian Sediments</title><title>Microbial ecology</title><description>Microbial communities from riparian sediments contaminatedwith high levels of Ni and U were examined for metal-tolerantmicroorganisms. Isolation of four aerobic Ni-tolerant, Gram-positiveheterotrophic bacteria indicated selection pressure from Ni. Theseisolates were identified as Arthrobacter oxydans NR-1, Streptomycesgalbus NR-2, Streptomyces aureofaciens NR-3, and Kitasatosporacystarginea NR-4 based on partial 16S rDNA sequences. A functional genemicroarray containing gene probes for functions associated withbiogeochemical cycling, metal homeostasis, and organic contaminantdegradation showed little overlap among the four isolates. Fifteen of thegenes were detected in all four isolates with only two of these relatedto metal resistance, specifically to tellurium. Each of the four isolatesalso displayed resistance to at least one of six antibiotics tested, withresistance to kanamycin, gentamycin, and ciprofloxacin observed in atleast two of the isolates. Further characterization of S. aureofaciensNR-3 and K. cystarginea NR-4 demonstrated that both isolates expressed Nitolerance constitutively. In addition, both were able to grow in higherconcentrations of Ni at pH 6 as compared to pH 7 (42.6 and 8.5 mM Ni atpH 6 and 7, respectively). Tolerance to Cd, Co, and Zn was also examinedin these two isolates; a similar pH-dependent metal tolerance wasobserved when grown with Co and Zn. Neither isolate was tolerant to Cd.These findings suggest that Ni is exerting a selection pressure at thissite for metal-resistant actinomycetes.</description><subject>ANTIBIOTICS</subject><subject>BACTERIA</subject><subject>Bioremediation, Extremophiles, Field Studies, StressResponse</subject><subject>COMMUNITIES</subject><subject>FUNCTIONALS</subject><subject>GENES</subject><subject>HOMEOSTASIS</subject><subject>MICROORGANISMS</subject><subject>PROBES</subject><subject>SEDIMENTS</subject><subject>STREPTOMYCES</subject><subject>TELLURIUM</subject><subject>TOLERANCE</subject><issn>0095-3628</issn><issn>1432-184X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><recordid>eNqNysFKw0AQgOFFFIzWd1gfYCHJprU5B6seFNEeeivDZmJHszOyMyr49B70ATz98PEfuarpYhuadbc7dlVd98sQV-361J2pvtZ1c7VqY-W-7lRmMBL2wKMfDlAgGRb6_kWZ_EY-ir8pkMOjKBl94gOlN5zDVmYswObvKRWR8gJMmtVPRbIfhA0yMRiO_oneoRCwf8aRMrLpwp1MMCte_PXcXW6ut8NtEDXaayLDdEjCjMn2fWyXfRf_8_wA2CFPfw</recordid><startdate>20060830</startdate><enddate>20060830</enddate><creator>Van Nostrand, Joy D.</creator><creator>Khijniak, Tatiana V.</creator><creator>Gentry, Terry J.</creator><creator>Novak, Michelle T.</creator><creator>Sowder, Andrew G.</creator><creator>Zhou, Jizhong Z.</creator><creator>Bertsch, PaulM</creator><creator>Morris, Pamela J.</creator><scope>OTOTI</scope></search><sort><creationdate>20060830</creationdate><title>Isolation and Characterization of Four Gram-PositiveNickel-Tolerant Microorganisms from Contaminated Riparian Sediments</title><author>Van Nostrand, Joy D. ; Khijniak, Tatiana V. ; Gentry, Terry J. ; Novak, Michelle T. ; Sowder, Andrew G. ; Zhou, Jizhong Z. ; Bertsch, PaulM ; Morris, Pamela J.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-osti_scitechconnect_9325943</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>ANTIBIOTICS</topic><topic>BACTERIA</topic><topic>Bioremediation, Extremophiles, Field Studies, StressResponse</topic><topic>COMMUNITIES</topic><topic>FUNCTIONALS</topic><topic>GENES</topic><topic>HOMEOSTASIS</topic><topic>MICROORGANISMS</topic><topic>PROBES</topic><topic>SEDIMENTS</topic><topic>STREPTOMYCES</topic><topic>TELLURIUM</topic><topic>TOLERANCE</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Van Nostrand, Joy D.</creatorcontrib><creatorcontrib>Khijniak, Tatiana V.</creatorcontrib><creatorcontrib>Gentry, Terry J.</creatorcontrib><creatorcontrib>Novak, Michelle T.</creatorcontrib><creatorcontrib>Sowder, Andrew G.</creatorcontrib><creatorcontrib>Zhou, Jizhong Z.</creatorcontrib><creatorcontrib>Bertsch, PaulM</creatorcontrib><creatorcontrib>Morris, Pamela J.</creatorcontrib><creatorcontrib>COLLABORATION - Center for CoastalEnvironmental Health and Biomolecular Research and Hollings MarineLaboratory, U.S. National Oceanic and Atmospheric Administration,Charleston, SC 29412, USA</creatorcontrib><collection>OSTI.GOV</collection><jtitle>Microbial ecology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Van Nostrand, Joy D.</au><au>Khijniak, Tatiana V.</au><au>Gentry, Terry J.</au><au>Novak, Michelle T.</au><au>Sowder, Andrew G.</au><au>Zhou, Jizhong Z.</au><au>Bertsch, PaulM</au><au>Morris, Pamela J.</au><aucorp>COLLABORATION - Center for CoastalEnvironmental Health and Biomolecular Research and Hollings MarineLaboratory, U.S. National Oceanic and Atmospheric Administration,Charleston, SC 29412, USA</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Isolation and Characterization of Four Gram-PositiveNickel-Tolerant Microorganisms from Contaminated Riparian Sediments</atitle><jtitle>Microbial ecology</jtitle><date>2006-08-30</date><risdate>2006</risdate><volume>53</volume><issue>3</issue><issn>0095-3628</issn><eissn>1432-184X</eissn><abstract>Microbial communities from riparian sediments contaminatedwith high levels of Ni and U were examined for metal-tolerantmicroorganisms. Isolation of four aerobic Ni-tolerant, Gram-positiveheterotrophic bacteria indicated selection pressure from Ni. Theseisolates were identified as Arthrobacter oxydans NR-1, Streptomycesgalbus NR-2, Streptomyces aureofaciens NR-3, and Kitasatosporacystarginea NR-4 based on partial 16S rDNA sequences. A functional genemicroarray containing gene probes for functions associated withbiogeochemical cycling, metal homeostasis, and organic contaminantdegradation showed little overlap among the four isolates. Fifteen of thegenes were detected in all four isolates with only two of these relatedto metal resistance, specifically to tellurium. Each of the four isolatesalso displayed resistance to at least one of six antibiotics tested, withresistance to kanamycin, gentamycin, and ciprofloxacin observed in atleast two of the isolates. Further characterization of S. aureofaciensNR-3 and K. cystarginea NR-4 demonstrated that both isolates expressed Nitolerance constitutively. In addition, both were able to grow in higherconcentrations of Ni at pH 6 as compared to pH 7 (42.6 and 8.5 mM Ni atpH 6 and 7, respectively). Tolerance to Cd, Co, and Zn was also examinedin these two isolates; a similar pH-dependent metal tolerance wasobserved when grown with Co and Zn. Neither isolate was tolerant to Cd.These findings suggest that Ni is exerting a selection pressure at thissite for metal-resistant actinomycetes.</abstract><cop>United States</cop></addata></record> |
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subjects | ANTIBIOTICS BACTERIA Bioremediation, Extremophiles, Field Studies, StressResponse COMMUNITIES FUNCTIONALS GENES HOMEOSTASIS MICROORGANISMS PROBES SEDIMENTS STREPTOMYCES TELLURIUM TOLERANCE |
title | Isolation and Characterization of Four Gram-PositiveNickel-Tolerant Microorganisms from Contaminated Riparian Sediments |
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