Loading…

DFT and MP2 studies on the C2 C2α bond cleavage in thiamin catalysis

Thiamin diphosphate (ThDP), the biologically active derivative of vitamin B 1, is an important cofactor of several enzymes that catalyze the oxidative and non-oxidative conversion of α-keto acids. The final step of non-oxidative decarboxylation of pyruvate by pyruvate decarboxylase – the liberation...

Full description

Saved in:
Bibliographic Details
Published in:Journal of molecular catalysis. B, Enzymatic Enzymatic, 2009-11, Vol.61 (1), p.36-38
Main Authors: Friedemann, Rudolf, Tittmann, Kai, Golbik, Ralph, Hübner, Gerhard
Format: Article
Language:English
Subjects:
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by
cites
container_end_page 38
container_issue 1
container_start_page 36
container_title Journal of molecular catalysis. B, Enzymatic
container_volume 61
creator Friedemann, Rudolf
Tittmann, Kai
Golbik, Ralph
Hübner, Gerhard
description Thiamin diphosphate (ThDP), the biologically active derivative of vitamin B 1, is an important cofactor of several enzymes that catalyze the oxidative and non-oxidative conversion of α-keto acids. The final step of non-oxidative decarboxylation of pyruvate by pyruvate decarboxylase – the liberation of acetaldehyde – requires deprotonation of the α-hydroxyl group and cleavage of the C2–C2α bond of the transitory 2-(1-hydroxyethyl)-ThDP intermediate. It has been proposed that the cofactor 4′-amino/imino function is essentially involved in the deprotonation of the α-hydroxyl group. Proton transfer and C2–C2α cleavage may occur in a stepwise manner, or, alternatively in a concerted mechanism. Here, density functional theory (DFT) calculations as well as second order Møller–Plesset perturbation theory (MP2) studies were performed on a simple model for the enzyme using the program package Gaussian 03. Calculations favor a stepwise mechanism with initial formation of the C2α alkoxide, followed by C2–C2α bond cleavage.
doi_str_mv 10.1016/j.molcatb.2009.03.012
format article
fullrecord <record><control><sourceid>elsevier_pasca</sourceid><recordid>TN_cdi_pascalfrancis_primary_22148343</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S1381117709000794</els_id><sourcerecordid>S1381117709000794</sourcerecordid><originalsourceid>FETCH-LOGICAL-e241t-c750ccb7c6dfe107ad2023441bf2a8f87d5d7acbf7e5a642beb804144988218f3</originalsourceid><addsrcrecordid>eNotkN1KAzEQhYMoWKuPIOTGy11nkmyTXonUVoWKXtTrkL_VlO1u2ayFPpYv4jOZ0sLAGTiHmcNHyC1CiYCT-3W56RpnBlsygGkJvARkZ2SESvKCY6XO884VFohSXpKrlNYAwBDViMyfFitqWk_fPhhNw4-PIdGupcN3oDOW5--X2i77rglmZ74CjQczmk3W_NM0-xTTNbmoTZPCzUnH5HMxX81eiuX78-vscVkEJnAonKzAOSvdxNcBQRrPgHEh0NbMqFpJX3lpnK1lqMxEMBusAoFCTJViqGo-JnfHu1uTnGnq3rQuJr3t48b0e80YCsUFz7mHYy7kMrsYep1cDK0LPvbBDdp3USPoAz291id6-kBPA9eZHv8HHgVkxA</addsrcrecordid><sourcetype>Index Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>DFT and MP2 studies on the C2 C2α bond cleavage in thiamin catalysis</title><source>ScienceDirect Freedom Collection</source><creator>Friedemann, Rudolf ; Tittmann, Kai ; Golbik, Ralph ; Hübner, Gerhard</creator><creatorcontrib>Friedemann, Rudolf ; Tittmann, Kai ; Golbik, Ralph ; Hübner, Gerhard</creatorcontrib><description>Thiamin diphosphate (ThDP), the biologically active derivative of vitamin B 1, is an important cofactor of several enzymes that catalyze the oxidative and non-oxidative conversion of α-keto acids. The final step of non-oxidative decarboxylation of pyruvate by pyruvate decarboxylase – the liberation of acetaldehyde – requires deprotonation of the α-hydroxyl group and cleavage of the C2–C2α bond of the transitory 2-(1-hydroxyethyl)-ThDP intermediate. It has been proposed that the cofactor 4′-amino/imino function is essentially involved in the deprotonation of the α-hydroxyl group. Proton transfer and C2–C2α cleavage may occur in a stepwise manner, or, alternatively in a concerted mechanism. Here, density functional theory (DFT) calculations as well as second order Møller–Plesset perturbation theory (MP2) studies were performed on a simple model for the enzyme using the program package Gaussian 03. Calculations favor a stepwise mechanism with initial formation of the C2α alkoxide, followed by C2–C2α bond cleavage.</description><identifier>ISSN: 1381-1177</identifier><identifier>EISSN: 1873-3158</identifier><identifier>DOI: 10.1016/j.molcatb.2009.03.012</identifier><language>eng</language><publisher>Amsterdam: Elsevier B.V</publisher><subject>Ab initio calculations ; Bioconversions. Hemisynthesis ; Biological and medical sciences ; Biotechnology ; Fundamental and applied biological sciences. Psychology ; Intermediates ; Methods. Procedures. Technologies ; Reaction coordinate ; Transition state</subject><ispartof>Journal of molecular catalysis. B, Enzymatic, 2009-11, Vol.61 (1), p.36-38</ispartof><rights>2009 Elsevier B.V.</rights><rights>2015 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>309,310,314,780,784,789,790,23930,23931,25140,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=22148343$$DView record in Pascal Francis$$Hfree_for_read</backlink></links><search><creatorcontrib>Friedemann, Rudolf</creatorcontrib><creatorcontrib>Tittmann, Kai</creatorcontrib><creatorcontrib>Golbik, Ralph</creatorcontrib><creatorcontrib>Hübner, Gerhard</creatorcontrib><title>DFT and MP2 studies on the C2 C2α bond cleavage in thiamin catalysis</title><title>Journal of molecular catalysis. B, Enzymatic</title><description>Thiamin diphosphate (ThDP), the biologically active derivative of vitamin B 1, is an important cofactor of several enzymes that catalyze the oxidative and non-oxidative conversion of α-keto acids. The final step of non-oxidative decarboxylation of pyruvate by pyruvate decarboxylase – the liberation of acetaldehyde – requires deprotonation of the α-hydroxyl group and cleavage of the C2–C2α bond of the transitory 2-(1-hydroxyethyl)-ThDP intermediate. It has been proposed that the cofactor 4′-amino/imino function is essentially involved in the deprotonation of the α-hydroxyl group. Proton transfer and C2–C2α cleavage may occur in a stepwise manner, or, alternatively in a concerted mechanism. Here, density functional theory (DFT) calculations as well as second order Møller–Plesset perturbation theory (MP2) studies were performed on a simple model for the enzyme using the program package Gaussian 03. Calculations favor a stepwise mechanism with initial formation of the C2α alkoxide, followed by C2–C2α bond cleavage.</description><subject>Ab initio calculations</subject><subject>Bioconversions. Hemisynthesis</subject><subject>Biological and medical sciences</subject><subject>Biotechnology</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Intermediates</subject><subject>Methods. Procedures. Technologies</subject><subject>Reaction coordinate</subject><subject>Transition state</subject><issn>1381-1177</issn><issn>1873-3158</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><recordid>eNotkN1KAzEQhYMoWKuPIOTGy11nkmyTXonUVoWKXtTrkL_VlO1u2ayFPpYv4jOZ0sLAGTiHmcNHyC1CiYCT-3W56RpnBlsygGkJvARkZ2SESvKCY6XO884VFohSXpKrlNYAwBDViMyfFitqWk_fPhhNw4-PIdGupcN3oDOW5--X2i77rglmZ74CjQczmk3W_NM0-xTTNbmoTZPCzUnH5HMxX81eiuX78-vscVkEJnAonKzAOSvdxNcBQRrPgHEh0NbMqFpJX3lpnK1lqMxEMBusAoFCTJViqGo-JnfHu1uTnGnq3rQuJr3t48b0e80YCsUFz7mHYy7kMrsYep1cDK0LPvbBDdp3USPoAz291id6-kBPA9eZHv8HHgVkxA</recordid><startdate>20091101</startdate><enddate>20091101</enddate><creator>Friedemann, Rudolf</creator><creator>Tittmann, Kai</creator><creator>Golbik, Ralph</creator><creator>Hübner, Gerhard</creator><general>Elsevier B.V</general><general>Elsevier</general><scope>IQODW</scope></search><sort><creationdate>20091101</creationdate><title>DFT and MP2 studies on the C2 C2α bond cleavage in thiamin catalysis</title><author>Friedemann, Rudolf ; Tittmann, Kai ; Golbik, Ralph ; Hübner, Gerhard</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-e241t-c750ccb7c6dfe107ad2023441bf2a8f87d5d7acbf7e5a642beb804144988218f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Ab initio calculations</topic><topic>Bioconversions. Hemisynthesis</topic><topic>Biological and medical sciences</topic><topic>Biotechnology</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Intermediates</topic><topic>Methods. Procedures. Technologies</topic><topic>Reaction coordinate</topic><topic>Transition state</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Friedemann, Rudolf</creatorcontrib><creatorcontrib>Tittmann, Kai</creatorcontrib><creatorcontrib>Golbik, Ralph</creatorcontrib><creatorcontrib>Hübner, Gerhard</creatorcontrib><collection>Pascal-Francis</collection><jtitle>Journal of molecular catalysis. B, Enzymatic</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Friedemann, Rudolf</au><au>Tittmann, Kai</au><au>Golbik, Ralph</au><au>Hübner, Gerhard</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>DFT and MP2 studies on the C2 C2α bond cleavage in thiamin catalysis</atitle><jtitle>Journal of molecular catalysis. B, Enzymatic</jtitle><date>2009-11-01</date><risdate>2009</risdate><volume>61</volume><issue>1</issue><spage>36</spage><epage>38</epage><pages>36-38</pages><issn>1381-1177</issn><eissn>1873-3158</eissn><abstract>Thiamin diphosphate (ThDP), the biologically active derivative of vitamin B 1, is an important cofactor of several enzymes that catalyze the oxidative and non-oxidative conversion of α-keto acids. The final step of non-oxidative decarboxylation of pyruvate by pyruvate decarboxylase – the liberation of acetaldehyde – requires deprotonation of the α-hydroxyl group and cleavage of the C2–C2α bond of the transitory 2-(1-hydroxyethyl)-ThDP intermediate. It has been proposed that the cofactor 4′-amino/imino function is essentially involved in the deprotonation of the α-hydroxyl group. Proton transfer and C2–C2α cleavage may occur in a stepwise manner, or, alternatively in a concerted mechanism. Here, density functional theory (DFT) calculations as well as second order Møller–Plesset perturbation theory (MP2) studies were performed on a simple model for the enzyme using the program package Gaussian 03. Calculations favor a stepwise mechanism with initial formation of the C2α alkoxide, followed by C2–C2α bond cleavage.</abstract><cop>Amsterdam</cop><pub>Elsevier B.V</pub><doi>10.1016/j.molcatb.2009.03.012</doi><tpages>3</tpages></addata></record>
fulltext fulltext
identifier ISSN: 1381-1177
ispartof Journal of molecular catalysis. B, Enzymatic, 2009-11, Vol.61 (1), p.36-38
issn 1381-1177
1873-3158
language eng
recordid cdi_pascalfrancis_primary_22148343
source ScienceDirect Freedom Collection
subjects Ab initio calculations
Bioconversions. Hemisynthesis
Biological and medical sciences
Biotechnology
Fundamental and applied biological sciences. Psychology
Intermediates
Methods. Procedures. Technologies
Reaction coordinate
Transition state
title DFT and MP2 studies on the C2 C2α bond cleavage in thiamin catalysis
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-25T22%3A59%3A07IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-elsevier_pasca&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=DFT%20and%20MP2%20studies%20on%20the%20C2%20C2%CE%B1%20bond%20cleavage%20in%20thiamin%20catalysis&rft.jtitle=Journal%20of%20molecular%20catalysis.%20B,%20Enzymatic&rft.au=Friedemann,%20Rudolf&rft.date=2009-11-01&rft.volume=61&rft.issue=1&rft.spage=36&rft.epage=38&rft.pages=36-38&rft.issn=1381-1177&rft.eissn=1873-3158&rft_id=info:doi/10.1016/j.molcatb.2009.03.012&rft_dat=%3Celsevier_pasca%3ES1381117709000794%3C/elsevier_pasca%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-e241t-c750ccb7c6dfe107ad2023441bf2a8f87d5d7acbf7e5a642beb804144988218f3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true