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Analysis of k-ras nuclear expression in fibroblasts and mesangial cells
Ras GTPases are considered cytoplasmic proteins that must be localized to cell membranes for activation, and there are few evidences of the presence of any Ras isoform in nuclei of eukaryotic cells. Using conventional antibodies and inmunocytochemistry, differential centrifugation and western blot,...
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description | Ras GTPases are considered cytoplasmic proteins that must be localized to cell membranes for activation, and there are few evidences of the presence of any Ras isoform in nuclei of eukaryotic cells.
Using conventional antibodies and inmunocytochemistry, differential centrifugation and western blot, we have observed the putative presence of K-Ras isoform in the nuclei of fibroblasts and mesangial cells. In order to avoid cross-reactions with other Ras isoforms, and using antibodies against K-Ras (R-3400, H3845-M01, sc-30) or pan-Ras (05-516, OP40) in cells that only expressed the K-Ras isoform (fibroblasts obtained from H-ras(-/-),N-ras(-/-) mice) we also detected some nuclear positive expression. To further probe the identity of nuclear K-Ras, we have generated K-Ras knockout (K-ras(-/-)) embrionary fibroblasts by mating of K-ras(+/-) heterozygote mice. Using specific antibodies, only H- and N-Ras isoforms were observed in the cytoplasm of K-ras(-/-) fibroblasts. However, both K-Ras4A and K-Ras4B positive signals were detected by immunocytochemistry and Western blot with two commercial antibodies (sc-522 and sc-521 against each isoforms, respectively) in both cytoplasm and nuclei from K-ras(-/-) fibroblasts.
We show that the presence of K-Ras4B in fibroblast nuclei, already described by other authors, is probably due to a cross-reaction of the antibody with an undetermined nucleolar protein. Although this study also shows the possible nuclear expression of K-Ras isoform in fibroblasts or in mesangial cells, it also reveals the importance of being cautious in these studies about distribution of protein isoforms due to some important limitations imposed by the unspecificity of the antibodies or contaminations in cellular preparations. |
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Using conventional antibodies and inmunocytochemistry, differential centrifugation and western blot, we have observed the putative presence of K-Ras isoform in the nuclei of fibroblasts and mesangial cells. In order to avoid cross-reactions with other Ras isoforms, and using antibodies against K-Ras (R-3400, H3845-M01, sc-30) or pan-Ras (05-516, OP40) in cells that only expressed the K-Ras isoform (fibroblasts obtained from H-ras(-/-),N-ras(-/-) mice) we also detected some nuclear positive expression. To further probe the identity of nuclear K-Ras, we have generated K-Ras knockout (K-ras(-/-)) embrionary fibroblasts by mating of K-ras(+/-) heterozygote mice. Using specific antibodies, only H- and N-Ras isoforms were observed in the cytoplasm of K-ras(-/-) fibroblasts. However, both K-Ras4A and K-Ras4B positive signals were detected by immunocytochemistry and Western blot with two commercial antibodies (sc-522 and sc-521 against each isoforms, respectively) in both cytoplasm and nuclei from K-ras(-/-) fibroblasts.
We show that the presence of K-Ras4B in fibroblast nuclei, already described by other authors, is probably due to a cross-reaction of the antibody with an undetermined nucleolar protein. Although this study also shows the possible nuclear expression of K-Ras isoform in fibroblasts or in mesangial cells, it also reveals the importance of being cautious in these studies about distribution of protein isoforms due to some important limitations imposed by the unspecificity of the antibodies or contaminations in cellular preparations.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0008703</identifier><identifier>PMID: 20090846</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Analysis ; Animals ; Antibodies ; Base Sequence ; Cell activation ; Cell Biology/Cell Signaling ; Cell Biology/Nuclear Structure and Function ; Cell cycle ; Cell membranes ; Cell Nucleus - metabolism ; Centrifugation ; Chemokines ; Colorectal cancer ; Cross-reaction ; Cytoplasm ; Deoxyribonucleic acid ; DNA ; DNA Primers ; Enzyme-Linked Immunosorbent Assay ; Fibroblasts ; Fibroblasts - metabolism ; Fluorescent Antibody Technique ; G proteins ; Gene expression ; Genes, ras ; Glomerular Mesangium - cytology ; Glomerular Mesangium - metabolism ; Growth factors ; H-Ras protein ; Hydrogen-Ion Concentration ; Immunocytochemistry ; Immunoglobulins ; Isoforms ; K-Ras protein ; Localization ; Mammals ; Membranes ; Mesangial cells ; Mice ; Molecular Biology/Nucleolus and Nuclear Bodies ; Nuclear reactions ; Nuclei ; Nuclei (cytology) ; Nucleoli ; Plasma ; Polymerase Chain Reaction ; Proteins ; Signal transduction</subject><ispartof>PloS one, 2010-01, Vol.5 (1), p.e8703-e8703</ispartof><rights>COPYRIGHT 2010 Public Library of Science</rights><rights>2010 Fuentes-Calvo et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Fuentes-Calvo et al. 2010</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c691t-907c105f0ae125c7934b1419e067982e78c8f1dd6232430311f144fc30e596f33</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/1289257627/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/1289257627?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25752,27923,27924,37011,37012,44589,53790,53792,74997</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20090846$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Bonini, Marcelo G.</contributor><creatorcontrib>Fuentes-Calvo, Isabel</creatorcontrib><creatorcontrib>Blázquez-Medela, Ana M</creatorcontrib><creatorcontrib>Santos, Eugenio</creatorcontrib><creatorcontrib>López-Novoa, José M</creatorcontrib><creatorcontrib>Martínez-Salgado, Carlos</creatorcontrib><title>Analysis of k-ras nuclear expression in fibroblasts and mesangial cells</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Ras GTPases are considered cytoplasmic proteins that must be localized to cell membranes for activation, and there are few evidences of the presence of any Ras isoform in nuclei of eukaryotic cells.
Using conventional antibodies and inmunocytochemistry, differential centrifugation and western blot, we have observed the putative presence of K-Ras isoform in the nuclei of fibroblasts and mesangial cells. In order to avoid cross-reactions with other Ras isoforms, and using antibodies against K-Ras (R-3400, H3845-M01, sc-30) or pan-Ras (05-516, OP40) in cells that only expressed the K-Ras isoform (fibroblasts obtained from H-ras(-/-),N-ras(-/-) mice) we also detected some nuclear positive expression. To further probe the identity of nuclear K-Ras, we have generated K-Ras knockout (K-ras(-/-)) embrionary fibroblasts by mating of K-ras(+/-) heterozygote mice. Using specific antibodies, only H- and N-Ras isoforms were observed in the cytoplasm of K-ras(-/-) fibroblasts. However, both K-Ras4A and K-Ras4B positive signals were detected by immunocytochemistry and Western blot with two commercial antibodies (sc-522 and sc-521 against each isoforms, respectively) in both cytoplasm and nuclei from K-ras(-/-) fibroblasts.
We show that the presence of K-Ras4B in fibroblast nuclei, already described by other authors, is probably due to a cross-reaction of the antibody with an undetermined nucleolar protein. Although this study also shows the possible nuclear expression of K-Ras isoform in fibroblasts or in mesangial cells, it also reveals the importance of being cautious in these studies about distribution of protein isoforms due to some important limitations imposed by the unspecificity of the antibodies or contaminations in cellular preparations.</description><subject>Analysis</subject><subject>Animals</subject><subject>Antibodies</subject><subject>Base Sequence</subject><subject>Cell activation</subject><subject>Cell Biology/Cell Signaling</subject><subject>Cell Biology/Nuclear Structure and Function</subject><subject>Cell cycle</subject><subject>Cell membranes</subject><subject>Cell Nucleus - metabolism</subject><subject>Centrifugation</subject><subject>Chemokines</subject><subject>Colorectal cancer</subject><subject>Cross-reaction</subject><subject>Cytoplasm</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA Primers</subject><subject>Enzyme-Linked Immunosorbent Assay</subject><subject>Fibroblasts</subject><subject>Fibroblasts - metabolism</subject><subject>Fluorescent Antibody Technique</subject><subject>G proteins</subject><subject>Gene expression</subject><subject>Genes, ras</subject><subject>Glomerular Mesangium - cytology</subject><subject>Glomerular Mesangium - metabolism</subject><subject>Growth factors</subject><subject>H-Ras protein</subject><subject>Hydrogen-Ion Concentration</subject><subject>Immunocytochemistry</subject><subject>Immunoglobulins</subject><subject>Isoforms</subject><subject>K-Ras protein</subject><subject>Localization</subject><subject>Mammals</subject><subject>Membranes</subject><subject>Mesangial cells</subject><subject>Mice</subject><subject>Molecular Biology/Nucleolus and Nuclear Bodies</subject><subject>Nuclear reactions</subject><subject>Nuclei</subject><subject>Nuclei (cytology)</subject><subject>Nucleoli</subject><subject>Plasma</subject><subject>Polymerase Chain Reaction</subject><subject>Proteins</subject><subject>Signal transduction</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNqNkl1rFDEUhgdRbK3-A9EBQfFi13xNPm6EpWhdKBT8ug2ZTLKbdXayzZmR9t-bdadlR3ohuUhInvMm581bFC8xmmMq8IdNHFJn2vkudm6OEJIC0UfFKVaUzDhB9PHR-qR4BrBBqKKS86fFCUFIIcn4aXGxyBq3EKCMvvw1SwbKbrCtM6l0N7vkAELsytCVPtQp1q2BHkrTNeXWgelWwbSldW0Lz4sn3rTgXozzWfHj86fv519ml1cXy_PF5cxyhfuZQsJiVHlkHCaVFYqyGjOsHOJCSeKEtNLjpuGEEkYRxdhjxrylyFWKe0rPitcH3V0bQY8egMZEKlIJTkQmlgeiiWajdylsTbrV0QT9dyOmlTapD7lH3eCaCNkwQQ1ndVWpylmWLbIINb5iPmt9HG8b6q1rrOv6ZNqJ6PSkC2u9ir81kYhLwrPAu1EgxevBQa-3AfaGmc7FAbSgtGKUSJbJN_-QDzc3UiuT3x86H_O1dq-pF7kNRRBnOFPzB6g8GrcNNufFh7w_KXg_KchM7276lRkA9PLb1_9nr35O2bdH7NqZtl9DbIc-hwqmIDuANkWA5Py9xxjpfdzv3ND7uOsx7rns1fH_3Bfd5Zv-Aevs99c</recordid><startdate>20100114</startdate><enddate>20100114</enddate><creator>Fuentes-Calvo, Isabel</creator><creator>Blázquez-Medela, Ana M</creator><creator>Santos, Eugenio</creator><creator>López-Novoa, José M</creator><creator>Martínez-Salgado, Carlos</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20100114</creationdate><title>Analysis of k-ras nuclear expression in fibroblasts and mesangial cells</title><author>Fuentes-Calvo, Isabel ; Blázquez-Medela, Ana M ; Santos, Eugenio ; López-Novoa, José M ; Martínez-Salgado, Carlos</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c691t-907c105f0ae125c7934b1419e067982e78c8f1dd6232430311f144fc30e596f33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Analysis</topic><topic>Animals</topic><topic>Antibodies</topic><topic>Base Sequence</topic><topic>Cell activation</topic><topic>Cell Biology/Cell Signaling</topic><topic>Cell Biology/Nuclear Structure and Function</topic><topic>Cell cycle</topic><topic>Cell membranes</topic><topic>Cell Nucleus - metabolism</topic><topic>Centrifugation</topic><topic>Chemokines</topic><topic>Colorectal cancer</topic><topic>Cross-reaction</topic><topic>Cytoplasm</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA Primers</topic><topic>Enzyme-Linked Immunosorbent Assay</topic><topic>Fibroblasts</topic><topic>Fibroblasts - metabolism</topic><topic>Fluorescent Antibody Technique</topic><topic>G proteins</topic><topic>Gene expression</topic><topic>Genes, ras</topic><topic>Glomerular Mesangium - cytology</topic><topic>Glomerular Mesangium - metabolism</topic><topic>Growth factors</topic><topic>H-Ras protein</topic><topic>Hydrogen-Ion Concentration</topic><topic>Immunocytochemistry</topic><topic>Immunoglobulins</topic><topic>Isoforms</topic><topic>K-Ras protein</topic><topic>Localization</topic><topic>Mammals</topic><topic>Membranes</topic><topic>Mesangial cells</topic><topic>Mice</topic><topic>Molecular Biology/Nucleolus and Nuclear Bodies</topic><topic>Nuclear reactions</topic><topic>Nuclei</topic><topic>Nuclei (cytology)</topic><topic>Nucleoli</topic><topic>Plasma</topic><topic>Polymerase Chain Reaction</topic><topic>Proteins</topic><topic>Signal transduction</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Fuentes-Calvo, Isabel</creatorcontrib><creatorcontrib>Blázquez-Medela, Ana M</creatorcontrib><creatorcontrib>Santos, Eugenio</creatorcontrib><creatorcontrib>López-Novoa, José M</creatorcontrib><creatorcontrib>Martínez-Salgado, Carlos</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Opposing Viewpoints</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Nursing & Allied Health Database (ProQuest)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Meteorological & Geoastrophysical Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection (Proquest)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database (Proquest)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Materials Science Collection</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Materials Science Database</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>Meteorological & Geoastrophysical Abstracts - 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Using conventional antibodies and inmunocytochemistry, differential centrifugation and western blot, we have observed the putative presence of K-Ras isoform in the nuclei of fibroblasts and mesangial cells. In order to avoid cross-reactions with other Ras isoforms, and using antibodies against K-Ras (R-3400, H3845-M01, sc-30) or pan-Ras (05-516, OP40) in cells that only expressed the K-Ras isoform (fibroblasts obtained from H-ras(-/-),N-ras(-/-) mice) we also detected some nuclear positive expression. To further probe the identity of nuclear K-Ras, we have generated K-Ras knockout (K-ras(-/-)) embrionary fibroblasts by mating of K-ras(+/-) heterozygote mice. Using specific antibodies, only H- and N-Ras isoforms were observed in the cytoplasm of K-ras(-/-) fibroblasts. However, both K-Ras4A and K-Ras4B positive signals were detected by immunocytochemistry and Western blot with two commercial antibodies (sc-522 and sc-521 against each isoforms, respectively) in both cytoplasm and nuclei from K-ras(-/-) fibroblasts.
We show that the presence of K-Ras4B in fibroblast nuclei, already described by other authors, is probably due to a cross-reaction of the antibody with an undetermined nucleolar protein. Although this study also shows the possible nuclear expression of K-Ras isoform in fibroblasts or in mesangial cells, it also reveals the importance of being cautious in these studies about distribution of protein isoforms due to some important limitations imposed by the unspecificity of the antibodies or contaminations in cellular preparations.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>20090846</pmid><doi>10.1371/journal.pone.0008703</doi><tpages>e8703</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Analysis Animals Antibodies Base Sequence Cell activation Cell Biology/Cell Signaling Cell Biology/Nuclear Structure and Function Cell cycle Cell membranes Cell Nucleus - metabolism Centrifugation Chemokines Colorectal cancer Cross-reaction Cytoplasm Deoxyribonucleic acid DNA DNA Primers Enzyme-Linked Immunosorbent Assay Fibroblasts Fibroblasts - metabolism Fluorescent Antibody Technique G proteins Gene expression Genes, ras Glomerular Mesangium - cytology Glomerular Mesangium - metabolism Growth factors H-Ras protein Hydrogen-Ion Concentration Immunocytochemistry Immunoglobulins Isoforms K-Ras protein Localization Mammals Membranes Mesangial cells Mice Molecular Biology/Nucleolus and Nuclear Bodies Nuclear reactions Nuclei Nuclei (cytology) Nucleoli Plasma Polymerase Chain Reaction Proteins Signal transduction |
title | Analysis of k-ras nuclear expression in fibroblasts and mesangial cells |
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