SNPs array karyotyping reveals a novel recurrent 20p13 amplification in primary myelofibrosis

• Published in: PloS one 2011-11, Vol.6 (11), p.e27560
• Main Authors: Visani, Giuseppe, Sapienza, Maria Rosaria, Isidori, Alessandro, Tripodo, Claudio, Laginestra, Maria Antonella, Righi, Simona, Sagramoso Sacchetti, Carlo A, Gazzola, Anna, Mannu, Claudia, Rossi, Maura, De Nictolis, Michele, Valentini, Massimo, Donati, Meris, Emiliani, Roberto, Alesiani, Francesco, Paolini, Stefania, Finelli, Carlo, Pileri, Stefano A, Piccaluga, Pier Paolo
• Format: Article
• Language: English
• Subjects: Abnormalities; Aged; Alzheimer's disease; Amplification; Analysis; Biology; Bone marrow; Chromosome 1; Chromosomes; Chromosomes, Human, Pair 20 - genetics; Cloning; Cohort Studies; DNA - genetics; DNA Copy Number Variations - genetics; Female; Gene Amplification - genetics; Genes; Genomes; Genomics; Hematology; Humans; Immunohistochemistry; Karyotyping; Kinases; Laboratories; Lesions; Leukemia; Loss of Heterozygosity - genetics; Male; Medical research; Medicine; Mutation; Myelofibrosis; Myeloproliferative diseases; Oligonucleotide Array Sequence Analysis; Oncology; Pathogenesis; Pathology; Patients; Phosphatase; Polymorphism; Polymorphism, Single Nucleotide - genetics; Primary Myelofibrosis - genetics; Primary Myelofibrosis - metabolism; Proteins; Receptors, Cell Surface - metabolism; SHPS-1 protein; Signal transduction; Single nucleotide polymorphisms; Single-nucleotide polymorphism; Stem cells; Taq Polymerase - metabolism; Uniparental disomy; Uniparental Disomy - genetics
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0027560

The molecular pathogenesis of primary mielofibrosis (PMF) is still largely unknown. Recently, single-nucleotide polymorphism arrays (SNP-A) allowed for genome-wide profiling of copy-number alterations and acquired uniparental disomy (aUPD) at high-resolution. In this study we analyzed 20 PMF patients using the Genome-Wide Human SNP Array 6.0 in order to identify novel recurrent genomic abnormalities. We observed a complex karyotype in all cases, detecting all the previously reported lesions (del(5q), del(20q), del(13q), +8, aUPD at 9p24 and abnormalities on chromosome 1). In addition, we identified several novel cryptic lesions. In particular, we found a recurrent alteration involving cytoband 20p13 in 55% of patients. We defined a minimal affected region (MAR), an amplification of 9,911 base-pair (bp) overlapping the SIRPB1 gene locus. Noteworthy, by extending the analysis to the adjacent areas, the cytoband was overall affected in 95% of cases. Remarkably, these results were confirmed by real-time PCR and validated in silico in a large independent series of myeloproliferative diseases. Finally, by immunohistochemistry we found that SIRPB1 was over-expressed in the bone marrow of PMF patients carrying 20p13 amplification. In conclusion, we identified a novel highly recurrent genomic lesion in PMF patients, which definitely warrant further functional and clinical characterization.