Loading…
The evolutionary value of recombination is constrained by genome modularity
Genetic recombination is a fundamental evolutionary mechanism promoting biological adaptation. Using engineered recombinants of the small single-stranded DNA plant virus, Maize streak virus (MSV), we experimentally demonstrate that fragments of genetic material only function optimally if they reside...
Saved in:
Published in: | PLoS genetics 2005-10, Vol.1 (4), p.e51-e51 |
---|---|
Main Authors: | , , , |
Format: | Article |
Language: | English |
Subjects: | |
Citations: | Items that this one cites Items that cite this one |
Online Access: | Get full text |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
cited_by | cdi_FETCH-LOGICAL-c625t-ce267085537732e4eed35cdbd07b9767ca6bf63d6fb1f7685db19407b733ce8e3 |
---|---|
cites | cdi_FETCH-LOGICAL-c625t-ce267085537732e4eed35cdbd07b9767ca6bf63d6fb1f7685db19407b733ce8e3 |
container_end_page | e51 |
container_issue | 4 |
container_start_page | e51 |
container_title | PLoS genetics |
container_volume | 1 |
creator | Martin, Darren P van der Walt, Eric Posada, David Rybicki, Edward P |
description | Genetic recombination is a fundamental evolutionary mechanism promoting biological adaptation. Using engineered recombinants of the small single-stranded DNA plant virus, Maize streak virus (MSV), we experimentally demonstrate that fragments of genetic material only function optimally if they reside within genomes similar to those in which they evolved. The degree of similarity necessary for optimal functionality is correlated with the complexity of intragenomic interaction networks within which genome fragments must function. There is a striking correlation between our experimental results and the types of MSV recombinants that are detectable in nature, indicating that obligatory maintenance of intragenome interaction networks strongly constrains the evolutionary value of recombination for this virus and probably for genomes in general. |
doi_str_mv | 10.1371/journal.pgen.0010051 |
format | article |
fullrecord | <record><control><sourceid>proquest_plos_</sourceid><recordid>TN_cdi_plos_journals_1313457084</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_099045242cd74cefba9d34fcc9fa2121</doaj_id><sourcerecordid>2904651371</sourcerecordid><originalsourceid>FETCH-LOGICAL-c625t-ce267085537732e4eed35cdbd07b9767ca6bf63d6fb1f7685db19407b733ce8e3</originalsourceid><addsrcrecordid>eNqFUl2LFDEQHETxztN_IDog-LZrOslMJi_CcfhxeODL-RwySWcvS2ayJjML--_NuqPeieBTmlR1dXdRVfUSyBqYgHfbOKdRh_Vug-OaECCkgUfVOTQNWwlO-ON79Vn1LOctIazppHhanUFLORdEnFdfbu-wxn0M8-TjqNOh3uswYx1dndDEofejPiK1z7WJY56S9iPauj_UZW4csB6inYNOfjo8r544HTK-WN6L6tvHD7dXn1c3Xz9dX13erExLm2llkLaCdGU3IRhFjmhZY2xvieilaIXRbe9aZlvXgxNt19geJC-gYMxgh-yien3S3YWY1eJDVsCA8aYo88K4PjFs1Fu1S34ol6movfr5EdNG6TR5E1ARKQlvKKfGCm7Q9Vpaxp0x0mkKFIrW-2Xa3A9oDY7Fg_BA9CEy-ju1iXsFtKUgSRF4uwik-H3GPKnBZ4Mh6BHjnJUgAJ2Q8F8iyI5K4LIQ3_xF_LcJ_MQyKeac0P3eGYg6RuhXlzpGSC0RKm2v7t_7p2nJDPsBib3Fbg</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1313457084</pqid></control><display><type>article</type><title>The evolutionary value of recombination is constrained by genome modularity</title><source>PubMed (Medline)</source><source>Publicly Available Content Database</source><creator>Martin, Darren P ; van der Walt, Eric ; Posada, David ; Rybicki, Edward P</creator><contributor>Gibson, Greg</contributor><creatorcontrib>Martin, Darren P ; van der Walt, Eric ; Posada, David ; Rybicki, Edward P ; Gibson, Greg</creatorcontrib><description>Genetic recombination is a fundamental evolutionary mechanism promoting biological adaptation. Using engineered recombinants of the small single-stranded DNA plant virus, Maize streak virus (MSV), we experimentally demonstrate that fragments of genetic material only function optimally if they reside within genomes similar to those in which they evolved. The degree of similarity necessary for optimal functionality is correlated with the complexity of intragenomic interaction networks within which genome fragments must function. There is a striking correlation between our experimental results and the types of MSV recombinants that are detectable in nature, indicating that obligatory maintenance of intragenome interaction networks strongly constrains the evolutionary value of recombination for this virus and probably for genomes in general.</description><identifier>ISSN: 1553-7404</identifier><identifier>ISSN: 1553-7390</identifier><identifier>EISSN: 1553-7404</identifier><identifier>DOI: 10.1371/journal.pgen.0010051</identifier><identifier>PMID: 16244707</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Bioinformatics - Computational Biology ; Deoxyribonucleic acid ; DNA ; DNA repair ; Evolution ; Evolution, Molecular ; Experiments ; Genes ; Genetic engineering ; Genome ; Genome, Viral ; Genomes ; Hypotheses ; Maize streak virus ; Maize streak virus - genetics ; Models, Biological ; Models, Genetic ; Molecular Sequence Data ; Recombination, Genetic ; Virology ; Viruses ; Zea mays - genetics ; Zea mays - virology</subject><ispartof>PLoS genetics, 2005-10, Vol.1 (4), p.e51-e51</ispartof><rights>2005 Martin et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Martin DP, van der Walt E, Posada D, Rybicki EP (2005) The Evolutionary Value of Recombination Is Constrained by Genome Modularity. PLoS Genet 1(4): e51. doi:10.1371/journal.pgen.0010051</rights><rights>Copyright: © 2005 Martin et al. 2005</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c625t-ce267085537732e4eed35cdbd07b9767ca6bf63d6fb1f7685db19407b733ce8e3</citedby><cites>FETCH-LOGICAL-c625t-ce267085537732e4eed35cdbd07b9767ca6bf63d6fb1f7685db19407b733ce8e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/1313457084/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/1313457084?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16244707$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Gibson, Greg</contributor><creatorcontrib>Martin, Darren P</creatorcontrib><creatorcontrib>van der Walt, Eric</creatorcontrib><creatorcontrib>Posada, David</creatorcontrib><creatorcontrib>Rybicki, Edward P</creatorcontrib><title>The evolutionary value of recombination is constrained by genome modularity</title><title>PLoS genetics</title><addtitle>PLoS Genet</addtitle><description>Genetic recombination is a fundamental evolutionary mechanism promoting biological adaptation. Using engineered recombinants of the small single-stranded DNA plant virus, Maize streak virus (MSV), we experimentally demonstrate that fragments of genetic material only function optimally if they reside within genomes similar to those in which they evolved. The degree of similarity necessary for optimal functionality is correlated with the complexity of intragenomic interaction networks within which genome fragments must function. There is a striking correlation between our experimental results and the types of MSV recombinants that are detectable in nature, indicating that obligatory maintenance of intragenome interaction networks strongly constrains the evolutionary value of recombination for this virus and probably for genomes in general.</description><subject>Bioinformatics - Computational Biology</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA repair</subject><subject>Evolution</subject><subject>Evolution, Molecular</subject><subject>Experiments</subject><subject>Genes</subject><subject>Genetic engineering</subject><subject>Genome</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Hypotheses</subject><subject>Maize streak virus</subject><subject>Maize streak virus - genetics</subject><subject>Models, Biological</subject><subject>Models, Genetic</subject><subject>Molecular Sequence Data</subject><subject>Recombination, Genetic</subject><subject>Virology</subject><subject>Viruses</subject><subject>Zea mays - genetics</subject><subject>Zea mays - virology</subject><issn>1553-7404</issn><issn>1553-7390</issn><issn>1553-7404</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNqFUl2LFDEQHETxztN_IDog-LZrOslMJi_CcfhxeODL-RwySWcvS2ayJjML--_NuqPeieBTmlR1dXdRVfUSyBqYgHfbOKdRh_Vug-OaECCkgUfVOTQNWwlO-ON79Vn1LOctIazppHhanUFLORdEnFdfbu-wxn0M8-TjqNOh3uswYx1dndDEofejPiK1z7WJY56S9iPauj_UZW4csB6inYNOfjo8r544HTK-WN6L6tvHD7dXn1c3Xz9dX13erExLm2llkLaCdGU3IRhFjmhZY2xvieilaIXRbe9aZlvXgxNt19geJC-gYMxgh-yien3S3YWY1eJDVsCA8aYo88K4PjFs1Fu1S34ol6movfr5EdNG6TR5E1ARKQlvKKfGCm7Q9Vpaxp0x0mkKFIrW-2Xa3A9oDY7Fg_BA9CEy-ju1iXsFtKUgSRF4uwik-H3GPKnBZ4Mh6BHjnJUgAJ2Q8F8iyI5K4LIQ3_xF_LcJ_MQyKeac0P3eGYg6RuhXlzpGSC0RKm2v7t_7p2nJDPsBib3Fbg</recordid><startdate>20051001</startdate><enddate>20051001</enddate><creator>Martin, Darren P</creator><creator>van der Walt, Eric</creator><creator>Posada, David</creator><creator>Rybicki, Edward P</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QP</scope><scope>7QR</scope><scope>7SS</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7T7</scope><scope>7U9</scope><scope>C1K</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20051001</creationdate><title>The evolutionary value of recombination is constrained by genome modularity</title><author>Martin, Darren P ; van der Walt, Eric ; Posada, David ; Rybicki, Edward P</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c625t-ce267085537732e4eed35cdbd07b9767ca6bf63d6fb1f7685db19407b733ce8e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Bioinformatics - Computational Biology</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA repair</topic><topic>Evolution</topic><topic>Evolution, Molecular</topic><topic>Experiments</topic><topic>Genes</topic><topic>Genetic engineering</topic><topic>Genome</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>Hypotheses</topic><topic>Maize streak virus</topic><topic>Maize streak virus - genetics</topic><topic>Models, Biological</topic><topic>Models, Genetic</topic><topic>Molecular Sequence Data</topic><topic>Recombination, Genetic</topic><topic>Virology</topic><topic>Viruses</topic><topic>Zea mays - genetics</topic><topic>Zea mays - virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Martin, Darren P</creatorcontrib><creatorcontrib>van der Walt, Eric</creatorcontrib><creatorcontrib>Posada, David</creatorcontrib><creatorcontrib>Rybicki, Edward P</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>ProQuest_Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>PML(ProQuest Medical Library)</collection><collection>ProQuest Biological Science Journals</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Environmental Sciences and Pollution Management</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>Directory of Open Access Journals</collection><jtitle>PLoS genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Martin, Darren P</au><au>van der Walt, Eric</au><au>Posada, David</au><au>Rybicki, Edward P</au><au>Gibson, Greg</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The evolutionary value of recombination is constrained by genome modularity</atitle><jtitle>PLoS genetics</jtitle><addtitle>PLoS Genet</addtitle><date>2005-10-01</date><risdate>2005</risdate><volume>1</volume><issue>4</issue><spage>e51</spage><epage>e51</epage><pages>e51-e51</pages><issn>1553-7404</issn><issn>1553-7390</issn><eissn>1553-7404</eissn><abstract>Genetic recombination is a fundamental evolutionary mechanism promoting biological adaptation. Using engineered recombinants of the small single-stranded DNA plant virus, Maize streak virus (MSV), we experimentally demonstrate that fragments of genetic material only function optimally if they reside within genomes similar to those in which they evolved. The degree of similarity necessary for optimal functionality is correlated with the complexity of intragenomic interaction networks within which genome fragments must function. There is a striking correlation between our experimental results and the types of MSV recombinants that are detectable in nature, indicating that obligatory maintenance of intragenome interaction networks strongly constrains the evolutionary value of recombination for this virus and probably for genomes in general.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>16244707</pmid><doi>10.1371/journal.pgen.0010051</doi><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1553-7404 |
ispartof | PLoS genetics, 2005-10, Vol.1 (4), p.e51-e51 |
issn | 1553-7404 1553-7390 1553-7404 |
language | eng |
recordid | cdi_plos_journals_1313457084 |
source | PubMed (Medline); Publicly Available Content Database |
subjects | Bioinformatics - Computational Biology Deoxyribonucleic acid DNA DNA repair Evolution Evolution, Molecular Experiments Genes Genetic engineering Genome Genome, Viral Genomes Hypotheses Maize streak virus Maize streak virus - genetics Models, Biological Models, Genetic Molecular Sequence Data Recombination, Genetic Virology Viruses Zea mays - genetics Zea mays - virology |
title | The evolutionary value of recombination is constrained by genome modularity |
url | http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-19T10%3A00%3A45IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_plos_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=The%20evolutionary%20value%20of%20recombination%20is%20constrained%20by%20genome%20modularity&rft.jtitle=PLoS%20genetics&rft.au=Martin,%20Darren%20P&rft.date=2005-10-01&rft.volume=1&rft.issue=4&rft.spage=e51&rft.epage=e51&rft.pages=e51-e51&rft.issn=1553-7404&rft.eissn=1553-7404&rft_id=info:doi/10.1371/journal.pgen.0010051&rft_dat=%3Cproquest_plos_%3E2904651371%3C/proquest_plos_%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c625t-ce267085537732e4eed35cdbd07b9767ca6bf63d6fb1f7685db19407b733ce8e3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=1313457084&rft_id=info:pmid/16244707&rfr_iscdi=true |