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Simulated epidemics in an empirical spatiotemporal network of 50,185 sexual contacts
Sexual contact patterns, both in their temporal and network structure, can influence the spread of sexually transmitted infections (STI). Most previous literature has focused on effects of network topology; few studies have addressed the role of temporal structure. We simulate disease spread using S...
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Published in: | PLoS computational biology 2011-03, Vol.7 (3), p.e1001109-e1001109 |
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description | Sexual contact patterns, both in their temporal and network structure, can influence the spread of sexually transmitted infections (STI). Most previous literature has focused on effects of network topology; few studies have addressed the role of temporal structure. We simulate disease spread using SI and SIR models on an empirical temporal network of sexual contacts in high-end prostitution. We compare these results with several other approaches, including randomization of the data, classic mean-field approaches, and static network simulations. We observe that epidemic dynamics in this contact structure have well-defined, rather high epidemic thresholds. Temporal effects create a broad distribution of outbreak sizes, even if the per-contact transmission probability is taken to its hypothetical maximum of 100%. In general, we conclude that the temporal correlations of our network accelerate outbreaks, especially in the early phase of the epidemics, while the network topology (apart from the contact-rate distribution) slows them down. We find that the temporal correlations of sexual contacts can significantly change simulated outbreaks in a large empirical sexual network. Thus, temporal structures are needed alongside network topology to fully understand the spread of STIs. On a side note, our simulations further suggest that the specific type of commercial sex we investigate is not a reservoir of major importance for HIV. |
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Most previous literature has focused on effects of network topology; few studies have addressed the role of temporal structure. We simulate disease spread using SI and SIR models on an empirical temporal network of sexual contacts in high-end prostitution. We compare these results with several other approaches, including randomization of the data, classic mean-field approaches, and static network simulations. We observe that epidemic dynamics in this contact structure have well-defined, rather high epidemic thresholds. Temporal effects create a broad distribution of outbreak sizes, even if the per-contact transmission probability is taken to its hypothetical maximum of 100%. In general, we conclude that the temporal correlations of our network accelerate outbreaks, especially in the early phase of the epidemics, while the network topology (apart from the contact-rate distribution) slows them down. We find that the temporal correlations of sexual contacts can significantly change simulated outbreaks in a large empirical sexual network. Thus, temporal structures are needed alongside network topology to fully understand the spread of STIs. On a side note, our simulations further suggest that the specific type of commercial sex we investigate is not a reservoir of major importance for HIV.</description><identifier>ISSN: 1553-7358</identifier><identifier>ISSN: 1553-734X</identifier><identifier>EISSN: 1553-7358</identifier><identifier>DOI: 10.1371/journal.pcbi.1001109</identifier><identifier>PMID: 21445228</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Behavior ; Brazil - epidemiology ; Computer Simulation ; Disease Outbreaks ; Disease transmission ; Distribution ; Epidemics ; Female ; Fysik ; Health aspects ; Humans ; Infectious Diseases/Sexually Transmitted Diseases ; Internet ; Male ; Models, Biological ; Models, Statistical ; NATURAL SCIENCES ; NATURVETENSKAP ; Physics ; Physics/Interdisciplinary Physics ; Prostitution ; Public Health and Epidemiology/Epidemiology ; Public Health and Epidemiology/Infectious Diseases ; Sex ; Sex Work - statistics & numerical data ; Sexual Partners ; Sexually transmitted diseases ; Sexually Transmitted Diseases - epidemiology ; Social aspects ; South Korea ; Studies</subject><ispartof>PLoS computational biology, 2011-03, Vol.7 (3), p.e1001109-e1001109</ispartof><rights>COPYRIGHT 2011 Public Library of Science</rights><rights>Rocha et al. 2011</rights><rights>2011 Rocha et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited: Rocha LEC, Liljeros F, Holme P (2011) Simulated Epidemics in an Empirical Spatiotemporal Network of 50,185 Sexual Contacts. 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Most previous literature has focused on effects of network topology; few studies have addressed the role of temporal structure. We simulate disease spread using SI and SIR models on an empirical temporal network of sexual contacts in high-end prostitution. We compare these results with several other approaches, including randomization of the data, classic mean-field approaches, and static network simulations. We observe that epidemic dynamics in this contact structure have well-defined, rather high epidemic thresholds. Temporal effects create a broad distribution of outbreak sizes, even if the per-contact transmission probability is taken to its hypothetical maximum of 100%. In general, we conclude that the temporal correlations of our network accelerate outbreaks, especially in the early phase of the epidemics, while the network topology (apart from the contact-rate distribution) slows them down. We find that the temporal correlations of sexual contacts can significantly change simulated outbreaks in a large empirical sexual network. Thus, temporal structures are needed alongside network topology to fully understand the spread of STIs. On a side note, our simulations further suggest that the specific type of commercial sex we investigate is not a reservoir of major importance for HIV.</description><subject>Behavior</subject><subject>Brazil - epidemiology</subject><subject>Computer Simulation</subject><subject>Disease Outbreaks</subject><subject>Disease transmission</subject><subject>Distribution</subject><subject>Epidemics</subject><subject>Female</subject><subject>Fysik</subject><subject>Health aspects</subject><subject>Humans</subject><subject>Infectious Diseases/Sexually Transmitted Diseases</subject><subject>Internet</subject><subject>Male</subject><subject>Models, Biological</subject><subject>Models, Statistical</subject><subject>NATURAL SCIENCES</subject><subject>NATURVETENSKAP</subject><subject>Physics</subject><subject>Physics/Interdisciplinary Physics</subject><subject>Prostitution</subject><subject>Public Health and Epidemiology/Epidemiology</subject><subject>Public Health and Epidemiology/Infectious Diseases</subject><subject>Sex</subject><subject>Sex Work - statistics & numerical data</subject><subject>Sexual Partners</subject><subject>Sexually transmitted diseases</subject><subject>Sexually Transmitted Diseases - epidemiology</subject><subject>Social aspects</subject><subject>South Korea</subject><subject>Studies</subject><issn>1553-7358</issn><issn>1553-734X</issn><issn>1553-7358</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNqVk1tv1DAQhSMEoqXwDxBE6gMguovvsV-QVuW2UgUSLbxajjNZvCRxiBNa_j3OZls1EgKhPNgZf-fEOZpJkscYLTHN8KutH7rGVMvW5m6JEcIYqTvJIeacLjLK5d1b-4PkQQhbhOJWifvJAcGMcULkYXJx7uqhMj0UKbSugNrZkLomNU0Kdes6Z02Vhtb0zvex4Lv42kB_6bvvqS9Tjk6w5GmAqyEeWN_0xvbhYXKvNFWAR_v1KPny7u3F6YfF2af369PV2cJKxPqFzaVh2JBMKIF5LilBkFljAFkhQAEgBCZTrFQUGQq4QKUEQljOrJCyEPQoeTr5tpUPeh9I0JhixpGgSEZiPRGFN1vddq423S_tjdO7gu822nS9sxXoLDNlvIjCllNmpJWU5oAU45zlMitR9DqZvMIltEM-c3vjvq52bkM9aEYxGfGX_8bDoIViNIv06_2vDHkNhYWmj1HPRPOTxn3TG_9TUyQQFjgaPNsbdP7HAKHXtQsWqso04IegJVdEYSlH8vlfSSwzIqnijET0eEI3JibkmtLHb9sR1yvCqSCZojRSyz9Q8dm1k2-gdLE-E7yYCca-gat-Y4YQ9Pr883-wH-csm1jb-RA6KG_yw0iPQ3PdI3ocGr0fmih7cjv7G9H1lNDf8i4R3w</recordid><startdate>20110301</startdate><enddate>20110301</enddate><creator>Rocha, Luis E C</creator><creator>Liljeros, Fredrik</creator><creator>Holme, Petter</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISN</scope><scope>ISR</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>7X8</scope><scope>5PM</scope><scope>ADTPV</scope><scope>AOWAS</scope><scope>DG7</scope><scope>ADHXS</scope><scope>D8T</scope><scope>D93</scope><scope>ZZAVC</scope><scope>DOA</scope></search><sort><creationdate>20110301</creationdate><title>Simulated epidemics in an empirical spatiotemporal network of 50,185 sexual contacts</title><author>Rocha, Luis E C ; Liljeros, Fredrik ; Holme, Petter</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c804t-cb8a41a2769615b8320e7caae0c66e9ee00ea794f930a3e1d0f8e224b4c688d63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Behavior</topic><topic>Brazil - epidemiology</topic><topic>Computer Simulation</topic><topic>Disease Outbreaks</topic><topic>Disease transmission</topic><topic>Distribution</topic><topic>Epidemics</topic><topic>Female</topic><topic>Fysik</topic><topic>Health aspects</topic><topic>Humans</topic><topic>Infectious Diseases/Sexually Transmitted Diseases</topic><topic>Internet</topic><topic>Male</topic><topic>Models, Biological</topic><topic>Models, Statistical</topic><topic>NATURAL SCIENCES</topic><topic>NATURVETENSKAP</topic><topic>Physics</topic><topic>Physics/Interdisciplinary Physics</topic><topic>Prostitution</topic><topic>Public Health and Epidemiology/Epidemiology</topic><topic>Public Health and Epidemiology/Infectious Diseases</topic><topic>Sex</topic><topic>Sex Work - statistics & numerical data</topic><topic>Sexual Partners</topic><topic>Sexually transmitted diseases</topic><topic>Sexually Transmitted Diseases - epidemiology</topic><topic>Social aspects</topic><topic>South Korea</topic><topic>Studies</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Rocha, Luis E C</creatorcontrib><creatorcontrib>Liljeros, Fredrik</creatorcontrib><creatorcontrib>Holme, Petter</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Canada</collection><collection>Gale In Context: Science</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>SwePub</collection><collection>SwePub Articles</collection><collection>SWEPUB Stockholms universitet</collection><collection>SWEPUB Umeå universitet full text</collection><collection>SWEPUB Freely available online</collection><collection>SWEPUB Umeå universitet</collection><collection>SwePub Articles full text</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PLoS computational biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Rocha, Luis E C</au><au>Liljeros, Fredrik</au><au>Holme, Petter</au><au>Salathé, Marcel</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Simulated epidemics in an empirical spatiotemporal network of 50,185 sexual contacts</atitle><jtitle>PLoS computational biology</jtitle><addtitle>PLoS Comput Biol</addtitle><date>2011-03-01</date><risdate>2011</risdate><volume>7</volume><issue>3</issue><spage>e1001109</spage><epage>e1001109</epage><pages>e1001109-e1001109</pages><issn>1553-7358</issn><issn>1553-734X</issn><eissn>1553-7358</eissn><abstract>Sexual contact patterns, both in their temporal and network structure, can influence the spread of sexually transmitted infections (STI). Most previous literature has focused on effects of network topology; few studies have addressed the role of temporal structure. We simulate disease spread using SI and SIR models on an empirical temporal network of sexual contacts in high-end prostitution. We compare these results with several other approaches, including randomization of the data, classic mean-field approaches, and static network simulations. We observe that epidemic dynamics in this contact structure have well-defined, rather high epidemic thresholds. Temporal effects create a broad distribution of outbreak sizes, even if the per-contact transmission probability is taken to its hypothetical maximum of 100%. In general, we conclude that the temporal correlations of our network accelerate outbreaks, especially in the early phase of the epidemics, while the network topology (apart from the contact-rate distribution) slows them down. We find that the temporal correlations of sexual contacts can significantly change simulated outbreaks in a large empirical sexual network. Thus, temporal structures are needed alongside network topology to fully understand the spread of STIs. On a side note, our simulations further suggest that the specific type of commercial sex we investigate is not a reservoir of major importance for HIV.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>21445228</pmid><doi>10.1371/journal.pcbi.1001109</doi><oa>free_for_read</oa></addata></record> |
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subjects | Behavior Brazil - epidemiology Computer Simulation Disease Outbreaks Disease transmission Distribution Epidemics Female Fysik Health aspects Humans Infectious Diseases/Sexually Transmitted Diseases Internet Male Models, Biological Models, Statistical NATURAL SCIENCES NATURVETENSKAP Physics Physics/Interdisciplinary Physics Prostitution Public Health and Epidemiology/Epidemiology Public Health and Epidemiology/Infectious Diseases Sex Sex Work - statistics & numerical data Sexual Partners Sexually transmitted diseases Sexually Transmitted Diseases - epidemiology Social aspects South Korea Studies |
title | Simulated epidemics in an empirical spatiotemporal network of 50,185 sexual contacts |
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