Functional divergence in the genus Oenococcus as predicted by genome sequencing of the newly-described species, Oenococcus kitaharae

Oenococcus kitaharae is only the second member of the genus Oenococcus to be identified and is the closest relative of the industrially important wine bacterium Oenococcus oeni. To provide insight into this new species, the genome of the type strain of O. kitaharae, DSM 17330, was sequenced. Compari...

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Published in:PloS one 2012-01, Vol.7 (1), p.e29626-e29626
Main Authors: Borneman, Anthony R, McCarthy, Jane M, Chambers, Paul J, Bartowsky, Eveline J
Format: Article
Language:English
Subjects:
Algorithms
Amino acids
Amino Acids - biosynthesis
Analysis
Antimicrobial agents
Bacteriocins
Bioaccumulation
Bioinformatics
Biological evolution
Biology
Biosynthesis
Carbohydrate Metabolism - genetics
Carbohydrates
Chromosomes, Bacterial - genetics
CRISPR
Divergence
DNA sequencing
Fermentation
Gene sequencing
Genes
Genetic aspects
Genome, Bacterial - genetics
Genomes
Genomics
Lactic Acid - metabolism
Lactobacillus
Metabolic pathways
Metabolism
New species
Niches
Oenococcus - genetics
Oenococcus - metabolism
Oenococcus - physiology
Phenotype
Phylogenetics
Physiological aspects
Proteins
Relational data bases
Reproduction - genetics
Restriction-modification
Studies
Wine
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description Oenococcus kitaharae is only the second member of the genus Oenococcus to be identified and is the closest relative of the industrially important wine bacterium Oenococcus oeni. To provide insight into this new species, the genome of the type strain of O. kitaharae, DSM 17330, was sequenced. Comparison of the sequenced genomes of both species show that the genome of O. kitaharae DSM 17330 contains many genes with predicted functions in cellular defence (bacteriocins, antimicrobials, restriction-modification systems and a CRISPR locus) which are lacking in O. oeni. The two genomes also appear to differentially encode several metabolic pathways associated with amino acid biosynthesis and carbohydrate utilization and which have direct phenotypic consequences. This would indicate that the two species have evolved different survival techniques to suit their particular environmental niches. O. oeni has adapted to survive in the harsh, but predictable, environment of wine that provides very few competitive species. However O. kitaharae appears to have adapted to a growth environment in which biological competition provides a significant selective pressure by accumulating biological defence molecules, such as bacteriocins and restriction-modification systems, throughout its genome.
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source Publicly Available Content Database; PubMed Central
subjects Algorithms
Amino acids
Amino Acids - biosynthesis
Analysis
Antimicrobial agents
Bacteriocins
Bioaccumulation
Bioinformatics
Biological evolution
Biology
Biosynthesis
Carbohydrate Metabolism - genetics
Carbohydrates
Chromosomes, Bacterial - genetics
CRISPR
Divergence
DNA sequencing
Fermentation
Gene sequencing
Genes
Genetic aspects
Genome, Bacterial - genetics
Genomes
Genomics
Lactic Acid - metabolism
Lactobacillus
Metabolic pathways
Metabolism
New species
Niches
Oenococcus - genetics
Oenococcus - metabolism
Oenococcus - physiology
Phenotype
Phylogenetics
Physiological aspects
Proteins
Relational data bases
Reproduction - genetics
Restriction-modification
Studies
Wine
title Functional divergence in the genus Oenococcus as predicted by genome sequencing of the newly-described species, Oenococcus kitaharae
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