Meta-analysis of two genome-wide association studies of bovine paratuberculosis

• Published in: PloS one 2012-03, Vol.7 (3), p.e32578-e32578
• Main Authors: Minozzi, Giulietta, Williams, John L, Stella, Alessandra, Strozzi, Francesco, Luini, Mario, Settles, Matthew L, Taylor, Jeremy F, Whitlock, Robert H, Zanella, Ricardo, Neibergs, Holly L
• Format: Article
• Language: English
• Subjects: Agriculture; Analysis; Animal sciences; Animals; Bacteremia - diagnosis; Bacteria; Biology; Bovidae; Case-Control Studies; Cattle; Chromosome 12; Chromosomes; Cohort Studies; Colorectal cancer; Enzyme-linked immunosorbent assay; Enzyme-Linked Immunosorbent Assay - methods; Failure analysis; Female; Gene frequency; Genetic aspects; Genetic Predisposition to Disease; Genome-Wide Association Study; Genomes; Genomics; Genotype; Genotyping; Health aspects; Immune response; Immune response (humoral); Immune system; Immunity, Humoral; Infection; Infections; Infectious diseases; Influenza; Johne's disease; Laboratory animals; Language; Leukemia; Livestock; Loci; Markers; Medical research; Medicine; Meta-analysis; Models, Statistical; Mycobacterium avium; Paratuberculosis; Paratuberculosis - diagnosis; Paratuberculosis - genetics; Phenotype; Polymorphism, Single Nucleotide; Population; Populations; Single-nucleotide polymorphism; Studies; Veterinary Science; Zoonoses
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0032578

Bovine paratuberculosis (ParaTB) also known as Johne's disease, is a contagious fatal disease resulting from infection by Mycobacterium avium subspecies paratuberculosis (MAP). Previous studies have identified loci associated with ParaTB using different measurements to define cases and controls. The objective of this study was to combine the data from two recent studies to identify genetic loci associated with MAP tissue infection and humoral immune response, defined by MAP ELISA-positive cattle, by comparing cases and control animals for one or both measures of infection. The two populations used for the association analyses were a cohort of MAP tissue infected animals and control Holstein cows from the USA and the second cohort composed of ELISA-positive and ELISA-negative Holstein cows from Italy. Altogether 1190 cattle were genotyped with the Illumina BovineSNP50 BeadChip. SNP markers were removed if the minor allele frequency 5%. Animals were removed with >5% genotyping failure. Whole genome association analyses were conducted with the GRAMMAR-CG method using two different definitions of control populations. The analyses identified several loci (P