Survey of Endosymbionts in the Diaphorina citri Metagenome and Assembly of a Wolbachia wDi Draft Genome

• Published in: PloS one 2012-11, Vol.7 (11), p.e50067-e50067
• Main Authors: Saha, Surya, Hunter, Wayne B, Reese, Justin, Morgan, J. Kent, Marutani-Hert, Mizuri, Huang, Hong, Lindeberg, Magdalen, Zilberstein, Dan
• Format: Article
• Language: English
• Subjects: Animals; Annotations; Bacteria; Bacterial corrosion; Base Sequence; Bioinformatics; Biology; Candidatus Liberibacter asiaticus; Citrus fruits; Citrus greening; Cladistic analysis; Cytochrome; Demography; Deoxyribonucleic acid; Diaphorina citri; DNA; Endosymbionts; Gene mapping; Gene sequencing; genome; Genome, Bacterial - genetics; Genomes; Genomics; greening disease; Hemiptera; Hemiptera - genetics; Hemiptera - microbiology; Horticulture; insect vectors; Insects; Laboratories; Metagenome - genetics; metagenomics; microsymbionts; Molecular Sequence Annotation; Molecular Sequence Data; Nucleotide sequence; nucleotide sequences; Phylogenetics; Phylogeny; Plant diseases; Plant pathology; Psyllidae; ribosomal DNA; Salmonella; Sequence Analysis, DNA; Studies; Surveys; Symbiosis - genetics; Wolbachia; Wolbachia - genetics; Wolbachia pipientis
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0050067

Diaphorina citri (Hemiptera: Psyllidae), the Asian citrus psyllid, is the insect vector of Ca . Liberibacter asiaticus, the causal agent of citrus greening disease. Sequencing of the D. citri metagenome has been initiated to gain better understanding of the biology of this organism and the potential roles of its bacterial endosymbionts. To corroborate candidate endosymbionts previously identified by rDNA amplification, raw reads from the D. citri metagenome sequence were mapped to reference genome sequences. Results of the read mapping provided the most support for Wolbachia and an enteric bacterium most similar to Salmonella . Wolbachia -derived reads were extracted using the complete genome sequences for four Wolbachia strains. Reads were assembled into a draft genome sequence, and the annotation assessed for the presence of features potentially involved in host interaction. Genome alignment with the complete sequences reveals membership of Wolbachia wDi in supergroup B, further supported by phylogenetic analysis of FtsZ. FtsZ and Wsp phylogenies additionally indicate that the Wolbachia strain in the Florida D. citri isolate falls into a sub-clade of supergroup B, distinct from Wolbachia present in Chinese D. citri isolates, supporting the hypothesis that the D. citri introduced into Florida did not originate from China.