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Aberrant community architecture and attenuated persistence of uropathogenic Escherichia coli in the absence of individual IHF subunits
Uropathogenic Escherichia coli (UPEC) utilizes a complex community-based developmental pathway for growth within superficial epithelial cells of the bladder during cystitis. Extracellular DNA (eDNA) is a common matrix component of organized bacterial communities. Integration host factor (IHF) is a h...
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Published in: | PloS one 2012-10, Vol.7 (10), p.e48349-e48349 |
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description | Uropathogenic Escherichia coli (UPEC) utilizes a complex community-based developmental pathway for growth within superficial epithelial cells of the bladder during cystitis. Extracellular DNA (eDNA) is a common matrix component of organized bacterial communities. Integration host factor (IHF) is a heterodimeric protein that binds to double-stranded DNA and produces a hairpin bend. IHF-dependent DNA architectural changes act both intrabacterially and extrabacterially to regulate gene expression and community stability, respectively. We demonstrate that both IHF subunits are required for efficient colonization of the bladder, but are dispensable for early colonization of the kidney. The community architecture of the intracellular bacterial communities (IBCs) is quantitatively different in the absence of either IhfA or IhfB in the murine model for human urinary tract infection (UTI). Restoration of Type 1 pili by ectopic production does not restore colonization in the absence of IhfA, but partially compensates in the absence of IhfB. Furthermore, we describe a binding site for IHF that is upstream of the operon that encodes for the P-pilus. Taken together, these data suggest that both IHF and its constituent subunits (independent of the heterodimer), are able to participate in multiple aspects of the UPEC pathogenic lifestyle, and may have utility as a target for treatment of bacterial cystitis. |
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Extracellular DNA (eDNA) is a common matrix component of organized bacterial communities. Integration host factor (IHF) is a heterodimeric protein that binds to double-stranded DNA and produces a hairpin bend. IHF-dependent DNA architectural changes act both intrabacterially and extrabacterially to regulate gene expression and community stability, respectively. We demonstrate that both IHF subunits are required for efficient colonization of the bladder, but are dispensable for early colonization of the kidney. The community architecture of the intracellular bacterial communities (IBCs) is quantitatively different in the absence of either IhfA or IhfB in the murine model for human urinary tract infection (UTI). Restoration of Type 1 pili by ectopic production does not restore colonization in the absence of IhfA, but partially compensates in the absence of IhfB. Furthermore, we describe a binding site for IHF that is upstream of the operon that encodes for the P-pilus. Taken together, these data suggest that both IHF and its constituent subunits (independent of the heterodimer), are able to participate in multiple aspects of the UPEC pathogenic lifestyle, and may have utility as a target for treatment of bacterial cystitis.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0048349</identifier><identifier>PMID: 23133584</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Aberration ; Animal models ; Animals ; Architecture ; Bacteria ; Binding sites ; Biology ; Bladder ; Cell division ; Children & youth ; Cholera ; Chromosomes ; Colonization ; Communities ; Cystitis ; Cytoplasm ; Dentistry ; Deoxyribonuclease I - metabolism ; Deoxyribonucleic acid ; Dimerization ; DNA ; DNA, Bacterial - metabolism ; E coli ; Environmental DNA ; Epithelial cells ; Escherichia coli ; Escherichia coli Infections - microbiology ; Families & family life ; Female ; Gene expression ; Hospitals ; Humans ; Integration host factor ; Integration Host Factors - genetics ; Kidney - microbiology ; Kidneys ; Laboratories ; Medicine ; Mice ; Mice, Inbred C3H ; Microscopy, Fluorescence - methods ; Models, Genetic ; Molecular biology ; Mutation ; Pathogenesis ; Pili ; Promoter Regions, Genetic ; Protein binding ; Restoration ; Urinary bladder ; Urinary Bladder - microbiology ; Urinary tract ; Urinary tract diseases ; Urinary tract infections ; Urinary Tract Infections - microbiology ; Urogenital system ; Uropathogenic Escherichia coli - metabolism</subject><ispartof>PloS one, 2012-10, Vol.7 (10), p.e48349-e48349</ispartof><rights>COPYRIGHT 2012 Public Library of Science</rights><rights>2012 Justice et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 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Extracellular DNA (eDNA) is a common matrix component of organized bacterial communities. Integration host factor (IHF) is a heterodimeric protein that binds to double-stranded DNA and produces a hairpin bend. IHF-dependent DNA architectural changes act both intrabacterially and extrabacterially to regulate gene expression and community stability, respectively. We demonstrate that both IHF subunits are required for efficient colonization of the bladder, but are dispensable for early colonization of the kidney. The community architecture of the intracellular bacterial communities (IBCs) is quantitatively different in the absence of either IhfA or IhfB in the murine model for human urinary tract infection (UTI). Restoration of Type 1 pili by ectopic production does not restore colonization in the absence of IhfA, but partially compensates in the absence of IhfB. Furthermore, we describe a binding site for IHF that is upstream of the operon that encodes for the P-pilus. Taken together, these data suggest that both IHF and its constituent subunits (independent of the heterodimer), are able to participate in multiple aspects of the UPEC pathogenic lifestyle, and may have utility as a target for treatment of bacterial cystitis.</description><subject>Aberration</subject><subject>Animal models</subject><subject>Animals</subject><subject>Architecture</subject><subject>Bacteria</subject><subject>Binding sites</subject><subject>Biology</subject><subject>Bladder</subject><subject>Cell division</subject><subject>Children & youth</subject><subject>Cholera</subject><subject>Chromosomes</subject><subject>Colonization</subject><subject>Communities</subject><subject>Cystitis</subject><subject>Cytoplasm</subject><subject>Dentistry</subject><subject>Deoxyribonuclease I - metabolism</subject><subject>Deoxyribonucleic acid</subject><subject>Dimerization</subject><subject>DNA</subject><subject>DNA, Bacterial - metabolism</subject><subject>E coli</subject><subject>Environmental DNA</subject><subject>Epithelial cells</subject><subject>Escherichia coli</subject><subject>Escherichia coli Infections - microbiology</subject><subject>Families & family life</subject><subject>Female</subject><subject>Gene expression</subject><subject>Hospitals</subject><subject>Humans</subject><subject>Integration host factor</subject><subject>Integration Host Factors - genetics</subject><subject>Kidney - microbiology</subject><subject>Kidneys</subject><subject>Laboratories</subject><subject>Medicine</subject><subject>Mice</subject><subject>Mice, Inbred C3H</subject><subject>Microscopy, Fluorescence - methods</subject><subject>Models, Genetic</subject><subject>Molecular biology</subject><subject>Mutation</subject><subject>Pathogenesis</subject><subject>Pili</subject><subject>Promoter Regions, Genetic</subject><subject>Protein binding</subject><subject>Restoration</subject><subject>Urinary bladder</subject><subject>Urinary Bladder - microbiology</subject><subject>Urinary tract</subject><subject>Urinary tract diseases</subject><subject>Urinary tract infections</subject><subject>Urinary Tract Infections - microbiology</subject><subject>Urogenital system</subject><subject>Uropathogenic Escherichia coli - metabolism</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNqNk9tqGzEQhpfS0qRu36C0C4XSXtiVVtrTTcGEpDEEAj3ditnZWa_CWnIkbWheoM9dubaDXXJR9kIr6fv_0Yw0SfKasxkXJf90Y0dnYJitraEZY7ISsn6SnPJaZNMiY-Lpwf9J8sL7G8ZyURXF8-QkE1yIvJKnye95Q86BCSna1Wo0Otyn4LDXgTCMjlIwbQohkBkhUJuuyXnt4xQptV06OruG0NslGY3puceenI5qiHaDTrVJQx89Gr8XaNPqO92OMKSLy4vUj80mpn-ZPOtg8PRqN06SHxfn388up1fXXxZn86spFnUWph3rOBUCMgEIBQpkvK0JJchWiqrO87osm5wkk8TqvKuLmC6DpitEIZFhJSbJ263verBe7UroFRdZyQUviiISiy3RWrhRa6dX4O6VBa3-Lli3VOCCxoEUY03dCMQsYyg51hUKKVglWc6h7DqMXp930cZmRS2SCQ6GI9PjHaN7tbR3SsgqZzKLBh92Bs7ejuSDWmmPNAxgyI7x3FyKOqt4vM1J8u4f9PHsdtQSYgLadDbGxY2pmsuyZJLn9Sbs7BEqfi2tNMb31um4fiT4eCSITKBfYQmj92rx7ev_s9c_j9n3B2xPMITe22EM2hp_DMotiM5676h7KDJnatMu-2qoTbuoXbtE2ZvDC3oQ7ftD_AHw_xFN</recordid><startdate>20121025</startdate><enddate>20121025</enddate><creator>Justice, Sheryl S</creator><creator>Li, Birong</creator><creator>Downey, Jennifer S</creator><creator>Dabdoub, Shareef M</creator><creator>Brockson, M Elizabeth</creator><creator>Probst, G Duane</creator><creator>Ray, William C</creator><creator>Goodman, Steven D</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20121025</creationdate><title>Aberrant community architecture and attenuated persistence of uropathogenic Escherichia coli in the absence of individual IHF subunits</title><author>Justice, Sheryl S ; Li, Birong ; Downey, Jennifer S ; Dabdoub, Shareef M ; Brockson, M Elizabeth ; Probst, G Duane ; Ray, William C ; Goodman, Steven D</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c692t-f0f1e63a23aca6c3c01d9ec4a4d438955977b5e404e095f968660abf6364c0c83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Aberration</topic><topic>Animal models</topic><topic>Animals</topic><topic>Architecture</topic><topic>Bacteria</topic><topic>Binding sites</topic><topic>Biology</topic><topic>Bladder</topic><topic>Cell division</topic><topic>Children & youth</topic><topic>Cholera</topic><topic>Chromosomes</topic><topic>Colonization</topic><topic>Communities</topic><topic>Cystitis</topic><topic>Cytoplasm</topic><topic>Dentistry</topic><topic>Deoxyribonuclease I - metabolism</topic><topic>Deoxyribonucleic acid</topic><topic>Dimerization</topic><topic>DNA</topic><topic>DNA, Bacterial - metabolism</topic><topic>E coli</topic><topic>Environmental DNA</topic><topic>Epithelial cells</topic><topic>Escherichia coli</topic><topic>Escherichia coli Infections - microbiology</topic><topic>Families & family life</topic><topic>Female</topic><topic>Gene expression</topic><topic>Hospitals</topic><topic>Humans</topic><topic>Integration host factor</topic><topic>Integration Host Factors - genetics</topic><topic>Kidney - microbiology</topic><topic>Kidneys</topic><topic>Laboratories</topic><topic>Medicine</topic><topic>Mice</topic><topic>Mice, Inbred C3H</topic><topic>Microscopy, Fluorescence - methods</topic><topic>Models, Genetic</topic><topic>Molecular biology</topic><topic>Mutation</topic><topic>Pathogenesis</topic><topic>Pili</topic><topic>Promoter Regions, Genetic</topic><topic>Protein binding</topic><topic>Restoration</topic><topic>Urinary bladder</topic><topic>Urinary Bladder - microbiology</topic><topic>Urinary tract</topic><topic>Urinary tract diseases</topic><topic>Urinary tract infections</topic><topic>Urinary Tract Infections - microbiology</topic><topic>Urogenital system</topic><topic>Uropathogenic Escherichia coli - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Justice, Sheryl S</creatorcontrib><creatorcontrib>Li, Birong</creatorcontrib><creatorcontrib>Downey, Jennifer S</creatorcontrib><creatorcontrib>Dabdoub, Shareef M</creatorcontrib><creatorcontrib>Brockson, M Elizabeth</creatorcontrib><creatorcontrib>Probst, G Duane</creatorcontrib><creatorcontrib>Ray, William C</creatorcontrib><creatorcontrib>Goodman, Steven D</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Opposing Viewpoints Resource Center</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Nursing & Allied Health Database</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Meteorological & Geoastrophysical Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>ProQuest Health and Medical</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>Advanced Technologies & Aerospace Collection</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Materials Science Collection</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Materials Science Database</collection><collection>Nursing & Allied Health Database (Alumni Edition)</collection><collection>Meteorological & Geoastrophysical Abstracts - 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Extracellular DNA (eDNA) is a common matrix component of organized bacterial communities. Integration host factor (IHF) is a heterodimeric protein that binds to double-stranded DNA and produces a hairpin bend. IHF-dependent DNA architectural changes act both intrabacterially and extrabacterially to regulate gene expression and community stability, respectively. We demonstrate that both IHF subunits are required for efficient colonization of the bladder, but are dispensable for early colonization of the kidney. The community architecture of the intracellular bacterial communities (IBCs) is quantitatively different in the absence of either IhfA or IhfB in the murine model for human urinary tract infection (UTI). Restoration of Type 1 pili by ectopic production does not restore colonization in the absence of IhfA, but partially compensates in the absence of IhfB. Furthermore, we describe a binding site for IHF that is upstream of the operon that encodes for the P-pilus. Taken together, these data suggest that both IHF and its constituent subunits (independent of the heterodimer), are able to participate in multiple aspects of the UPEC pathogenic lifestyle, and may have utility as a target for treatment of bacterial cystitis.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>23133584</pmid><doi>10.1371/journal.pone.0048349</doi><tpages>e48349</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Aberration Animal models Animals Architecture Bacteria Binding sites Biology Bladder Cell division Children & youth Cholera Chromosomes Colonization Communities Cystitis Cytoplasm Dentistry Deoxyribonuclease I - metabolism Deoxyribonucleic acid Dimerization DNA DNA, Bacterial - metabolism E coli Environmental DNA Epithelial cells Escherichia coli Escherichia coli Infections - microbiology Families & family life Female Gene expression Hospitals Humans Integration host factor Integration Host Factors - genetics Kidney - microbiology Kidneys Laboratories Medicine Mice Mice, Inbred C3H Microscopy, Fluorescence - methods Models, Genetic Molecular biology Mutation Pathogenesis Pili Promoter Regions, Genetic Protein binding Restoration Urinary bladder Urinary Bladder - microbiology Urinary tract Urinary tract diseases Urinary tract infections Urinary Tract Infections - microbiology Urogenital system Uropathogenic Escherichia coli - metabolism |
title | Aberrant community architecture and attenuated persistence of uropathogenic Escherichia coli in the absence of individual IHF subunits |
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