Gene expression profile of the hippocampus of rats subjected to chronic immobilization stress

• Published in: PloS one 2013-03, Vol.8 (3), p.e57621-e57621
• Main Authors: Li, Xiao-Hong, Chen, Jia-Xu, Yue, Guang-Xin, Liu, Yue-Yun, Zhao, Xin, Guo, Xiao-Ling, Liu, Qun, Jiang, You-Ming, Bai, Ming-Hua
• Format: Article
• Language: English
• Subjects: Abdomen; Animal cognition; Animal tissues; Animals; Apoptosis; Arthritis; Bioinformatics; Biology; Chemical synthesis; Clinical medicine; Collagen; Computer programs; Cytokines; DNA microarrays; Down-Regulation - genetics; Extracellular matrix; Extracellular Matrix - genetics; FADD protein; Gene expression; Gene regulation; Gene Regulatory Networks - genetics; Genes; Genomes; Hippocampus; Hippocampus - metabolism; Immobilization; Immune system; Kinases; Laboratory animals; Male; Medical research; Medicine; Molecular Sequence Annotation; Nervous system; Oligonucleotide Array Sequence Analysis; Polymerase chain reaction; Rats; Rats, Sprague-Dawley; Real-Time Polymerase Chain Reaction; Rodents; Signal processing; Signal Transduction - genetics; Stress, Physiological - genetics; Stresses; Transcription; Transcription, Genetic; Transcriptome; Up-Regulation - genetics
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0057621

This study systematically investigated the effect of chronic stress on the hippocampus and its damage mechanism at the whole genome level. The rat whole genome expression chips (Illumina) were used to detect gene expression differences in the hippocampus of rats subjected to chronic immobilization stress (daily immobilization stress for 3 h, for 7 or 21 days). The hippocampus gene expression profile was studied through gene ontology and signal pathway analyses using bioinformatics. A differentially expressed transcription regulation network was also established. Real-time quantitative polymerase chain reaction (RT-PCR) was used to verify the microarray results and determine expression of the Gabra1, Fadd, Crhr2, and Cdk6 genes in the hippocampal tissues. Compared to the control group, 602 differentially expressed genes were detected in the hippocampus of rats subjected to stress for 7 days, while 566 differentially expressed genes were expressed in the animals experiencing stress for 21 days. The stress significantly inhibited the primary immune system functions of the hippocampus in animals subjected to stress for both 7 and 21 days. Immobilization activated the extracellular matrix receptor interaction pathway after 7 day exposure to stress and the cytokine-cytokine receptor interaction pathway. The enhanced collagen synthesis capacity of the hippocampal tissue was the core molecular event of the stress regulation network in the 7-day group, while the inhibition of hippocampal cell growth was the core molecular event in the 21-day group. For the Gabra1, Fadd, Crhr2, and Cdk6 genes, RT-PCR results were nearly in line with gene chip assay results. During the 7-day and 21-day stress processes, the combined action of polygenic, multilevel, and multi-signal pathways leads to the disorder of the immunologic functions of the hippocampus, hippocampal apoptosis, and proliferation disequilibrium.