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Urinary metabolic biomarker and pathway study of hepatitis B virus infected patients based on UPLC-MS system
Hepatitis B virus (HBV) is the fatal consequence of chronic hepatitis, and lack of biomarkers has been a long standing bottleneck in the clinical diagnosis. Metabolomics concerns with comprehensive analysis of small molecules and provides a powerful approach to discover biomarkers in biological syst...
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Published in: | PloS one 2013-05, Vol.8 (5), p.e64381-e64381 |
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description | Hepatitis B virus (HBV) is the fatal consequence of chronic hepatitis, and lack of biomarkers has been a long standing bottleneck in the clinical diagnosis. Metabolomics concerns with comprehensive analysis of small molecules and provides a powerful approach to discover biomarkers in biological systems. Here, we present metabolomics analysis applying ultra-performance liquid chromatography/electrospray ionization quadruple time-of-flight mass spectrometry. (UPLC-Q-TOF-HDMS) to determine metabolite alterations in HBV patients. Most important permutations are elaborated using multivariate statistical analysis and network analysis that was used to select the metabolites for the noninvasive diagnosis of HBV. In this study, the total 11 urinary differential metabolites were identified and contributed to HBV progress involving several key metabolic pathways by using pathway analysis with MetPA, which are promising biomarker candidates for diagnostic research. More importantly, of 11 altered metabolites, 4 metabolite markers were effective for the diagnosis of human HBV, achieved a satisfactory accuracy, sensitivity and specificity, respectively. It demonstrates that metabolomics has the potential as a non-invasive tool to evaluate the potential of these metabolites in the early diagnosis of HBV patients. These findings may be promising to yield a valuable insight into the pathophysiology of HBV and to advance the approaches of diagnosis, treatment, and prevention. |
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Metabolomics concerns with comprehensive analysis of small molecules and provides a powerful approach to discover biomarkers in biological systems. Here, we present metabolomics analysis applying ultra-performance liquid chromatography/electrospray ionization quadruple time-of-flight mass spectrometry. (UPLC-Q-TOF-HDMS) to determine metabolite alterations in HBV patients. Most important permutations are elaborated using multivariate statistical analysis and network analysis that was used to select the metabolites for the noninvasive diagnosis of HBV. In this study, the total 11 urinary differential metabolites were identified and contributed to HBV progress involving several key metabolic pathways by using pathway analysis with MetPA, which are promising biomarker candidates for diagnostic research. More importantly, of 11 altered metabolites, 4 metabolite markers were effective for the diagnosis of human HBV, achieved a satisfactory accuracy, sensitivity and specificity, respectively. It demonstrates that metabolomics has the potential as a non-invasive tool to evaluate the potential of these metabolites in the early diagnosis of HBV patients. These findings may be promising to yield a valuable insight into the pathophysiology of HBV and to advance the approaches of diagnosis, treatment, and prevention.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0064381</identifier><identifier>PMID: 23696887</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Adult ; Alzheimer's disease ; Alzheimers disease ; Bioindicators ; Biology ; Biomarkers ; Chemistry ; Chromatography ; Chromatography, High Pressure Liquid - methods ; Diagnosis ; Diagnostic systems ; Female ; Health care ; Hepatitis ; Hepatitis B ; Hepatitis B - urine ; Hepatitis B virus ; Hepatitis B virus - pathogenicity ; Humans ; Ionization ; Liquid chromatography ; Liver cancer ; Liver cirrhosis ; Male ; Mass spectrometry ; Mass spectroscopy ; Medical diagnosis ; Medical research ; Medicine ; Metabolic pathways ; Metabolism ; Metabolites ; Metabolomics ; Metabolomics - methods ; Middle Aged ; Multivariate statistical analysis ; Network analysis ; Patient compliance ; Patients ; Pattern recognition ; Permutations ; Proteomics ; Scientific imaging ; Spectrometry, Mass, Electrospray Ionization - methods ; Statistical analysis ; Stem cells ; Urine ; Viruses</subject><ispartof>PloS one, 2013-05, Vol.8 (5), p.e64381-e64381</ispartof><rights>COPYRIGHT 2013 Public Library of Science</rights><rights>2013 Zhang et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2013 Zhang et al 2013 Zhang et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c692t-d9daa02112b12a0ee55b5e1ebe8adf40dbe451d420b3ebdaa8c2f501d902e1fa3</citedby><cites>FETCH-LOGICAL-c692t-d9daa02112b12a0ee55b5e1ebe8adf40dbe451d420b3ebdaa8c2f501d902e1fa3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/1352868944/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/1352868944?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23696887$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Mehta, Anand S.</contributor><creatorcontrib>Zhang, Aihua</creatorcontrib><creatorcontrib>Sun, Hui</creatorcontrib><creatorcontrib>Han, Ying</creatorcontrib><creatorcontrib>Yan, Guangli</creatorcontrib><creatorcontrib>Wang, Xijun</creatorcontrib><title>Urinary metabolic biomarker and pathway study of hepatitis B virus infected patients based on UPLC-MS system</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Hepatitis B virus (HBV) is the fatal consequence of chronic hepatitis, and lack of biomarkers has been a long standing bottleneck in the clinical diagnosis. Metabolomics concerns with comprehensive analysis of small molecules and provides a powerful approach to discover biomarkers in biological systems. Here, we present metabolomics analysis applying ultra-performance liquid chromatography/electrospray ionization quadruple time-of-flight mass spectrometry. (UPLC-Q-TOF-HDMS) to determine metabolite alterations in HBV patients. Most important permutations are elaborated using multivariate statistical analysis and network analysis that was used to select the metabolites for the noninvasive diagnosis of HBV. In this study, the total 11 urinary differential metabolites were identified and contributed to HBV progress involving several key metabolic pathways by using pathway analysis with MetPA, which are promising biomarker candidates for diagnostic research. 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These findings may be promising to yield a valuable insight into the pathophysiology of HBV and to advance the approaches of diagnosis, treatment, and prevention.</description><subject>Adult</subject><subject>Alzheimer's disease</subject><subject>Alzheimers disease</subject><subject>Bioindicators</subject><subject>Biology</subject><subject>Biomarkers</subject><subject>Chemistry</subject><subject>Chromatography</subject><subject>Chromatography, High Pressure Liquid - methods</subject><subject>Diagnosis</subject><subject>Diagnostic systems</subject><subject>Female</subject><subject>Health care</subject><subject>Hepatitis</subject><subject>Hepatitis B</subject><subject>Hepatitis B - urine</subject><subject>Hepatitis B virus</subject><subject>Hepatitis B virus - pathogenicity</subject><subject>Humans</subject><subject>Ionization</subject><subject>Liquid chromatography</subject><subject>Liver cancer</subject><subject>Liver cirrhosis</subject><subject>Male</subject><subject>Mass spectrometry</subject><subject>Mass spectroscopy</subject><subject>Medical diagnosis</subject><subject>Medical research</subject><subject>Medicine</subject><subject>Metabolic pathways</subject><subject>Metabolism</subject><subject>Metabolites</subject><subject>Metabolomics</subject><subject>Metabolomics - 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Metabolomics concerns with comprehensive analysis of small molecules and provides a powerful approach to discover biomarkers in biological systems. Here, we present metabolomics analysis applying ultra-performance liquid chromatography/electrospray ionization quadruple time-of-flight mass spectrometry. (UPLC-Q-TOF-HDMS) to determine metabolite alterations in HBV patients. Most important permutations are elaborated using multivariate statistical analysis and network analysis that was used to select the metabolites for the noninvasive diagnosis of HBV. In this study, the total 11 urinary differential metabolites were identified and contributed to HBV progress involving several key metabolic pathways by using pathway analysis with MetPA, which are promising biomarker candidates for diagnostic research. More importantly, of 11 altered metabolites, 4 metabolite markers were effective for the diagnosis of human HBV, achieved a satisfactory accuracy, sensitivity and specificity, respectively. It demonstrates that metabolomics has the potential as a non-invasive tool to evaluate the potential of these metabolites in the early diagnosis of HBV patients. These findings may be promising to yield a valuable insight into the pathophysiology of HBV and to advance the approaches of diagnosis, treatment, and prevention.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>23696887</pmid><doi>10.1371/journal.pone.0064381</doi><tpages>e64381</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Adult Alzheimer's disease Alzheimers disease Bioindicators Biology Biomarkers Chemistry Chromatography Chromatography, High Pressure Liquid - methods Diagnosis Diagnostic systems Female Health care Hepatitis Hepatitis B Hepatitis B - urine Hepatitis B virus Hepatitis B virus - pathogenicity Humans Ionization Liquid chromatography Liver cancer Liver cirrhosis Male Mass spectrometry Mass spectroscopy Medical diagnosis Medical research Medicine Metabolic pathways Metabolism Metabolites Metabolomics Metabolomics - methods Middle Aged Multivariate statistical analysis Network analysis Patient compliance Patients Pattern recognition Permutations Proteomics Scientific imaging Spectrometry, Mass, Electrospray Ionization - methods Statistical analysis Stem cells Urine Viruses |
title | Urinary metabolic biomarker and pathway study of hepatitis B virus infected patients based on UPLC-MS system |
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