An innovative cloning platform enables large-scale production and maturation of an oxygen-tolerant [NiFe]-hydrogenase from Cupriavidus necator in Escherichia coli

• Published in: PloS one 2013-07, Vol.8 (7), p.e68812
• Main Authors: Schiffels, Johannes, Pinkenburg, Olaf, Schelden, Maximilian, Aboulnaga, El-Hussiny A A, Baumann, Marcus E M, Selmer, Thorsten
• Format: Article
• Language: English
• Subjects: Batch Cell Culture Techniques; Biology; Biotechnology; Cassettes; Cell culture; Clonal deletion; Cloning; Cloning, Molecular; Combinatorial analysis; Cupriavidus necator; Cupriavidus necator - enzymology; Cupriavidus necator - genetics; E coli; Endopeptidase; Enzyme Activation; Enzymes; Escherichia coli; Escherichia coli - genetics; Escherichia coli - metabolism; Gene Deletion; Gene Expression; Gene Order; Genes; Genetic aspects; Genetic Vectors - genetics; Growth conditions; Hydrogen; Hydrogenase; Hydrogenase - biosynthesis; Hydrogenase - genetics; Hydrogenase - isolation & purification; Intermetallic compounds; Iron compounds; Ligands; Maturation; Metabolic pathways; NAD; Nickel; Nickel compounds; Oxygen; Permease; Plasmids; Protein Multimerization; Proteins; Ralstonia eutropha; Recombinant Fusion Proteins - biosynthesis; Recombinant Fusion Proteins - genetics; Recombinant Fusion Proteins - isolation & purification
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0068812

Expression of multiple heterologous genes in a dedicated host is a prerequisite for approaches in synthetic biology, spanning from the production of recombinant multiprotein complexes to the transfer of tailor-made metabolic pathways. Such attempts are often exacerbated, due in most cases to a lack of proper directional, robust and readily accessible genetic tools. Here, we introduce an innovative system for cloning and expression of multiple genes in Escherichia coli BL21 (DE3). Using the novel methodology, genes are equipped with individual promoters and terminators and subsequently assembled. The resulting multiple gene cassettes may either be placed in one vector or alternatively distributed among a set of compatible plasmids. We demonstrate the effectiveness of the developed tool by production and maturation of the NAD(+)reducing soluble [NiFe]-hydrogenase (SH) from Cupriavidus necator H16 (formerly Ralstonia eutropha H16) in E. coli BL21Star™ (DE3). The SH (encoded in hoxFUYHI) was successfully matured by co-expression of a dedicated set of auxiliary genes, comprising seven hyp genes (hypC1D1E1A2B2F2X) along with hoxW, which encodes a specific endopeptidase. Deletion of genes involved in SH maturation reduced maturation efficiency substantially. Further addition of hoxN1, encoding a high-affinity nickel permease from C. necator, considerably increased maturation efficiency in E. coli. Carefully balanced growth conditions enabled hydrogenase production at high cell-densities, scoring mg·(Liter culture)(-1) yields of purified functional SH. Specific activities of up to 7.2±1.15 U·mg(-1) were obtained in cell-free extracts, which is in the range of the highest activities ever determined in C. necator extracts. The recombinant enzyme was isolated in equal purity and stability as previously achieved with the native form, yielding ultrapure preparations with anaerobic specific activities of up to 230 U·mg(-1). Owing to the combinatorial power exhibited by the presented cloning platform, the system might represent an important step towards new routes in synthetic biology.