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Examining the effectiveness of discriminant function analysis and cluster analysis in species identification of male field crickets based on their calling songs
Traditional taxonomy based on morphology has often failed in accurate species identification owing to the occurrence of cryptic species, which are reproductively isolated but morphologically identical. Molecular data have thus been used to complement morphology in species identification. The sexual...
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Published in: | PloS one 2013-09, Vol.8 (9), p.e75930-e75930 |
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description | Traditional taxonomy based on morphology has often failed in accurate species identification owing to the occurrence of cryptic species, which are reproductively isolated but morphologically identical. Molecular data have thus been used to complement morphology in species identification. The sexual advertisement calls in several groups of acoustically communicating animals are species-specific and can thus complement molecular data as non-invasive tools for identification. Several statistical tools and automated identifier algorithms have been used to investigate the efficiency of acoustic signals in species identification. Despite a plethora of such methods, there is a general lack of knowledge regarding the appropriate usage of these methods in specific taxa. In this study, we investigated the performance of two commonly used statistical methods, discriminant function analysis (DFA) and cluster analysis, in identification and classification based on acoustic signals of field cricket species belonging to the subfamily Gryllinae. Using a comparative approach we evaluated the optimal number of species and calling song characteristics for both the methods that lead to most accurate classification and identification. The accuracy of classification using DFA was high and was not affected by the number of taxa used. However, a constraint in using discriminant function analysis is the need for a priori classification of songs. Accuracy of classification using cluster analysis, which does not require a priori knowledge, was maximum for 6-7 taxa and decreased significantly when more than ten taxa were analysed together. We also investigated the efficacy of two novel derived acoustic features in improving the accuracy of identification. Our results show that DFA is a reliable statistical tool for species identification using acoustic signals. Our results also show that cluster analysis of acoustic signals in crickets works effectively for species classification and identification. |
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Molecular data have thus been used to complement morphology in species identification. The sexual advertisement calls in several groups of acoustically communicating animals are species-specific and can thus complement molecular data as non-invasive tools for identification. Several statistical tools and automated identifier algorithms have been used to investigate the efficiency of acoustic signals in species identification. Despite a plethora of such methods, there is a general lack of knowledge regarding the appropriate usage of these methods in specific taxa. In this study, we investigated the performance of two commonly used statistical methods, discriminant function analysis (DFA) and cluster analysis, in identification and classification based on acoustic signals of field cricket species belonging to the subfamily Gryllinae. Using a comparative approach we evaluated the optimal number of species and calling song characteristics for both the methods that lead to most accurate classification and identification. The accuracy of classification using DFA was high and was not affected by the number of taxa used. However, a constraint in using discriminant function analysis is the need for a priori classification of songs. Accuracy of classification using cluster analysis, which does not require a priori knowledge, was maximum for 6-7 taxa and decreased significantly when more than ten taxa were analysed together. We also investigated the efficacy of two novel derived acoustic features in improving the accuracy of identification. Our results show that DFA is a reliable statistical tool for species identification using acoustic signals. Our results also show that cluster analysis of acoustic signals in crickets works effectively for species classification and identification.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0075930</identifier><identifier>PMID: 24086666</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Acoustics ; Advertisements ; Algorithms ; Amphibia ; Animals ; Anura ; Biodiversity ; Calling behavior ; Classification ; Classification - methods ; Cluster Analysis ; Clusters ; Communication ; Crickets ; Cryptic species ; Discriminant Analysis ; Fish ; Frogs ; Function analysis ; Gryllidae - classification ; Gryllidae - genetics ; Gryllidae - physiology ; Gryllinae ; Identification ; Identification methods ; India ; Male ; Morphology ; Orthoptera ; Reproductive isolation ; Science ; Song ; Sound Spectrography ; Species classification ; Species Specificity ; Statistical analysis ; Statistical methods ; Statistics ; Studies ; Taxa ; Taxonomy ; Vocalization, Animal - physiology</subject><ispartof>PloS one, 2013-09, Vol.8 (9), p.e75930-e75930</ispartof><rights>2013 Jaiswara et al. 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Molecular data have thus been used to complement morphology in species identification. The sexual advertisement calls in several groups of acoustically communicating animals are species-specific and can thus complement molecular data as non-invasive tools for identification. Several statistical tools and automated identifier algorithms have been used to investigate the efficiency of acoustic signals in species identification. Despite a plethora of such methods, there is a general lack of knowledge regarding the appropriate usage of these methods in specific taxa. In this study, we investigated the performance of two commonly used statistical methods, discriminant function analysis (DFA) and cluster analysis, in identification and classification based on acoustic signals of field cricket species belonging to the subfamily Gryllinae. Using a comparative approach we evaluated the optimal number of species and calling song characteristics for both the methods that lead to most accurate classification and identification. The accuracy of classification using DFA was high and was not affected by the number of taxa used. However, a constraint in using discriminant function analysis is the need for a priori classification of songs. Accuracy of classification using cluster analysis, which does not require a priori knowledge, was maximum for 6-7 taxa and decreased significantly when more than ten taxa were analysed together. We also investigated the efficacy of two novel derived acoustic features in improving the accuracy of identification. Our results show that DFA is a reliable statistical tool for species identification using acoustic signals. 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jaiswara, Ranjana</au><au>Nandi, Diptarup</au><au>Balakrishnan, Rohini</au><au>Consuegra, Sofia</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Examining the effectiveness of discriminant function analysis and cluster analysis in species identification of male field crickets based on their calling songs</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2013-09-25</date><risdate>2013</risdate><volume>8</volume><issue>9</issue><spage>e75930</spage><epage>e75930</epage><pages>e75930-e75930</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Traditional taxonomy based on morphology has often failed in accurate species identification owing to the occurrence of cryptic species, which are reproductively isolated but morphologically identical. Molecular data have thus been used to complement morphology in species identification. The sexual advertisement calls in several groups of acoustically communicating animals are species-specific and can thus complement molecular data as non-invasive tools for identification. Several statistical tools and automated identifier algorithms have been used to investigate the efficiency of acoustic signals in species identification. Despite a plethora of such methods, there is a general lack of knowledge regarding the appropriate usage of these methods in specific taxa. In this study, we investigated the performance of two commonly used statistical methods, discriminant function analysis (DFA) and cluster analysis, in identification and classification based on acoustic signals of field cricket species belonging to the subfamily Gryllinae. Using a comparative approach we evaluated the optimal number of species and calling song characteristics for both the methods that lead to most accurate classification and identification. The accuracy of classification using DFA was high and was not affected by the number of taxa used. However, a constraint in using discriminant function analysis is the need for a priori classification of songs. Accuracy of classification using cluster analysis, which does not require a priori knowledge, was maximum for 6-7 taxa and decreased significantly when more than ten taxa were analysed together. We also investigated the efficacy of two novel derived acoustic features in improving the accuracy of identification. Our results show that DFA is a reliable statistical tool for species identification using acoustic signals. Our results also show that cluster analysis of acoustic signals in crickets works effectively for species classification and identification.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>24086666</pmid><doi>10.1371/journal.pone.0075930</doi><oa>free_for_read</oa></addata></record> |
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subjects | Acoustics Advertisements Algorithms Amphibia Animals Anura Biodiversity Calling behavior Classification Classification - methods Cluster Analysis Clusters Communication Crickets Cryptic species Discriminant Analysis Fish Frogs Function analysis Gryllidae - classification Gryllidae - genetics Gryllidae - physiology Gryllinae Identification Identification methods India Male Morphology Orthoptera Reproductive isolation Science Song Sound Spectrography Species classification Species Specificity Statistical analysis Statistical methods Statistics Studies Taxa Taxonomy Vocalization, Animal - physiology |
title | Examining the effectiveness of discriminant function analysis and cluster analysis in species identification of male field crickets based on their calling songs |
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