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An association study between hypoxia inducible factor-1alpha (HIF-1α) polymorphisms and osteonecrosis
Bone hypoxia resulting from impaired blood flow is the final pathway for the development of osteonecrosis (ON). The aim of this study was to evaluate if HIF-1α, the major transcription factor triggered by hypoxia, is genetically implicated in susceptibility to ON. For this we analyzed frequencies of...
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Published in: | PloS one 2013-11, Vol.8 (11), p.e79647-e79647 |
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creator | Chachami, Georgia Kalousi, Alkmini Papatheodorou, Loukia Lyberopoulou, Aggeliki Nasikas, Vasileios Tanimoto, Keiji Simos, George Malizos, Konstantinos N Georgatsou, Eleni |
description | Bone hypoxia resulting from impaired blood flow is the final pathway for the development of osteonecrosis (ON). The aim of this study was to evaluate if HIF-1α, the major transcription factor triggered by hypoxia, is genetically implicated in susceptibility to ON. For this we analyzed frequencies of three known HIF-1α polymorphisms: one in exon 2 (C111A) and two in exon 12 (C1772T and G1790A) and their association with ON in a Greek population. Genotype analysis was performed using PCR-RFLP and rare alleles were further confirmed with sequencing. We found that genotype and allele frequency of C1772T and G1790A SNP of HIF-1α (SNPs found in our cohort) were not significantly different in ON patients compared to control patients. Furthermore these SNPs could not be associated with the different subgroups of ON. At the protein level we observed that the corresponding mutations (P582S and A588T, respectively) are not significant for protein function since the activity, expression and localization of the mutant proteins is practically indistinguishable from wt in HEK293 and Saos-2 cells. These results suggest that these missense mutations in the HIF-1α gene are not important for the risk of developing ON. |
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The aim of this study was to evaluate if HIF-1α, the major transcription factor triggered by hypoxia, is genetically implicated in susceptibility to ON. For this we analyzed frequencies of three known HIF-1α polymorphisms: one in exon 2 (C111A) and two in exon 12 (C1772T and G1790A) and their association with ON in a Greek population. Genotype analysis was performed using PCR-RFLP and rare alleles were further confirmed with sequencing. We found that genotype and allele frequency of C1772T and G1790A SNP of HIF-1α (SNPs found in our cohort) were not significantly different in ON patients compared to control patients. Furthermore these SNPs could not be associated with the different subgroups of ON. At the protein level we observed that the corresponding mutations (P582S and A588T, respectively) are not significant for protein function since the activity, expression and localization of the mutant proteins is practically indistinguishable from wt in HEK293 and Saos-2 cells. 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The aim of this study was to evaluate if HIF-1α, the major transcription factor triggered by hypoxia, is genetically implicated in susceptibility to ON. For this we analyzed frequencies of three known HIF-1α polymorphisms: one in exon 2 (C111A) and two in exon 12 (C1772T and G1790A) and their association with ON in a Greek population. Genotype analysis was performed using PCR-RFLP and rare alleles were further confirmed with sequencing. We found that genotype and allele frequency of C1772T and G1790A SNP of HIF-1α (SNPs found in our cohort) were not significantly different in ON patients compared to control patients. Furthermore these SNPs could not be associated with the different subgroups of ON. At the protein level we observed that the corresponding mutations (P582S and A588T, respectively) are not significant for protein function since the activity, expression and localization of the mutant proteins is practically indistinguishable from wt in HEK293 and Saos-2 cells. These results suggest that these missense mutations in the HIF-1α gene are not important for the risk of developing ON.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>24260273</pmid><doi>10.1371/journal.pone.0079647</doi><oa>free_for_read</oa></addata></record> |
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subjects | Adolescent Adult Aged Alcohol Alleles Arthritis Biochemistry Biocompatibility Biomedical research Blood flow Bone blood flow Bone marrow Cancer Cell Line Diabetes Exons - genetics Female Gene frequency Genes Genetic aspects Health sciences Humans Hypoxia Hypoxia-Inducible Factor 1, alpha Subunit - genetics Ischemia Laboratories Localization Male Medical research Medicine Middle Aged Missense mutation Mutation NMR Nuclear magnetic resonance Osteonecrosis Osteonecrosis - genetics Pathogenesis Patients Polymerase chain reaction Polymorphism, Restriction Fragment Length - genetics Polymorphism, Single Nucleotide - genetics Population Population genetics Prostate Proteins Restriction fragment length polymorphism Single nucleotide polymorphisms Single-nucleotide polymorphism Subgroups Vascular endothelial growth factor Young Adult |
title | An association study between hypoxia inducible factor-1alpha (HIF-1α) polymorphisms and osteonecrosis |
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