A linear relationship between crystal size and fragment binding time observed crystallographically: implications for fragment library screening using acoustic droplet ejection

• Published in: PloS one 2014-07, Vol.9 (7), p.e101036-e101036
• Main Authors: Cole, Krystal, Roessler, Christian G, Mulé, Elizabeth A, Benson-Xu, Emma J, Mullen, Jeffrey D, Le, Benjamin A, Tieman, Alanna M, Birone, Claire, Brown, Maria, Hernandez, Jesus, Neff, Sherry, Williams, Daniel, Allaire, Marc, Orville, Allen M, Sweet, Robert M, Soares, Alexei S
• Format: Article
• Language: English
• Subjects: Acoustics; Belt conveyors; Biochemistry; Biology and Life Sciences; Conveyors; Crystallization; Crystallography; Crystallography, X-Ray - methods; Crystals; Data acquisition; Data collection; Data processing; Dehydration; Ejection; Exploitation; Fragmentation; Fragments; High-throughput screening; Laboratories; Libraries; Library collections; Ligands; Medical screening; Medicine and Health Sciences; Methods; Physical Sciences; Proteins; Proteins - chemistry; Screening; Synchrotrons; X-ray diffraction
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0101036

High throughput screening technologies such as acoustic droplet ejection (ADE) greatly increase the rate at which X-ray diffraction data can be acquired from crystals. One promising high throughput screening application of ADE is to rapidly combine protein crystals with fragment libraries. In this approach, each fragment soaks into a protein crystal either directly on data collection media or on a moving conveyor belt which then delivers the crystals to the X-ray beam. By simultaneously handling multiple crystals combined with fragment specimens, these techniques relax the automounter duty-cycle bottleneck that currently prevents optimal exploitation of third generation synchrotrons. Two factors limit the speed and scope of projects that are suitable for fragment screening using techniques such as ADE. Firstly, in applications where the high throughput screening apparatus is located inside the X-ray station (such as the conveyor belt system described above), the speed of data acquisition is limited by the time required for each fragment to soak into its protein crystal. Secondly, in applications where crystals are combined with fragments directly on data acquisition media (including both of the ADE methods described above), the maximum time that fragments have to soak into crystals is limited by evaporative dehydration of the protein crystals during the fragment soak. Here we demonstrate that both of these problems can be minimized by using small crystals, because the soak time required for a fragment hit to attain high occupancy depends approximately linearly on crystal size.