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Isolated assessment of translation or rotation severely underestimates the effects of subject motion in fMRI data
Subject motion has long since been known to be a major confound in functional MRI studies of the human brain. For resting-state functional MRI in particular, data corruption due to motion artefacts has been shown to be most relevant. However, despite 6 parameters (3 for translations and 3 for rotati...
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description | Subject motion has long since been known to be a major confound in functional MRI studies of the human brain. For resting-state functional MRI in particular, data corruption due to motion artefacts has been shown to be most relevant. However, despite 6 parameters (3 for translations and 3 for rotations) being required to fully describe the head's motion trajectory between timepoints, not all are routinely used to assess subject motion. Using structural (n = 964) as well as functional MRI (n = 200) data from public repositories, a series of experiments was performed to assess the impact of using a reduced parameter set (translationonly and rotationonly) versus using the complete parameter set. It could be shown that the usage of 65 mm as an indicator of the average cortical distance is a valid approximation in adults, although care must be taken when comparing children and adults using the same measure. The effect of using slightly smaller or larger values is minimal. Further, both translationonly and rotationonly severely underestimate the full extent of subject motion; consequently, both translationonly and rotationonly discard substantially fewer datapoints when used for quality control purposes ("motion scrubbing"). Finally, both translationonly and rotationonly severely underperform in predicting the full extent of the signal changes and the overall variance explained by motion in functional MRI data. These results suggest that a comprehensive measure, taking into account all available parameters, should be used to characterize subject motion in fMRI. |
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For resting-state functional MRI in particular, data corruption due to motion artefacts has been shown to be most relevant. However, despite 6 parameters (3 for translations and 3 for rotations) being required to fully describe the head's motion trajectory between timepoints, not all are routinely used to assess subject motion. Using structural (n = 964) as well as functional MRI (n = 200) data from public repositories, a series of experiments was performed to assess the impact of using a reduced parameter set (translationonly and rotationonly) versus using the complete parameter set. It could be shown that the usage of 65 mm as an indicator of the average cortical distance is a valid approximation in adults, although care must be taken when comparing children and adults using the same measure. The effect of using slightly smaller or larger values is minimal. 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These results suggest that a comprehensive measure, taking into account all available parameters, should be used to characterize subject motion in fMRI.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0106498</identifier><identifier>PMID: 25333359</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Adolescent ; Adult ; Adults ; Aged ; Aged, 80 and over ; Aging ; Analysis ; Artefacts ; Biology and Life Sciences ; Brain ; Brain - diagnostic imaging ; Brain Mapping ; Child ; Child, Preschool ; Children ; Corruption ; Cortex ; Datasets ; Experiments ; Female ; Functional magnetic resonance imaging ; Head ; Head Movements ; Humans ; Image Processing, Computer-Assisted ; Magnetic resonance imaging ; Magnetic Resonance Imaging - methods ; Male ; Medical imaging ; Medicine and Health Sciences ; Middle Aged ; NMR ; Nuclear magnetic resonance ; Parameters ; Pediatrics ; Quality control ; Radiography ; Repositories ; Software ; Trajectory analysis ; Translations ; Washing ; Young Adult</subject><ispartof>PloS one, 2014-10, Vol.9 (10), p.e106498-e106498</ispartof><rights>COPYRIGHT 2014 Public Library of Science</rights><rights>2014 Marko Wilke. This is an open-access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 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These results suggest that a comprehensive measure, taking into account all available parameters, should be used to characterize subject motion in fMRI.</description><subject>Adolescent</subject><subject>Adult</subject><subject>Adults</subject><subject>Aged</subject><subject>Aged, 80 and over</subject><subject>Aging</subject><subject>Analysis</subject><subject>Artefacts</subject><subject>Biology and Life Sciences</subject><subject>Brain</subject><subject>Brain - diagnostic imaging</subject><subject>Brain Mapping</subject><subject>Child</subject><subject>Child, Preschool</subject><subject>Children</subject><subject>Corruption</subject><subject>Cortex</subject><subject>Datasets</subject><subject>Experiments</subject><subject>Female</subject><subject>Functional magnetic resonance imaging</subject><subject>Head</subject><subject>Head Movements</subject><subject>Humans</subject><subject>Image Processing, Computer-Assisted</subject><subject>Magnetic resonance imaging</subject><subject>Magnetic Resonance Imaging - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wilke, Marko</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Isolated assessment of translation or rotation severely underestimates the effects of subject motion in fMRI data</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2014-10-21</date><risdate>2014</risdate><volume>9</volume><issue>10</issue><spage>e106498</spage><epage>e106498</epage><pages>e106498-e106498</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Subject motion has long since been known to be a major confound in functional MRI studies of the human brain. For resting-state functional MRI in particular, data corruption due to motion artefacts has been shown to be most relevant. However, despite 6 parameters (3 for translations and 3 for rotations) being required to fully describe the head's motion trajectory between timepoints, not all are routinely used to assess subject motion. Using structural (n = 964) as well as functional MRI (n = 200) data from public repositories, a series of experiments was performed to assess the impact of using a reduced parameter set (translationonly and rotationonly) versus using the complete parameter set. It could be shown that the usage of 65 mm as an indicator of the average cortical distance is a valid approximation in adults, although care must be taken when comparing children and adults using the same measure. The effect of using slightly smaller or larger values is minimal. Further, both translationonly and rotationonly severely underestimate the full extent of subject motion; consequently, both translationonly and rotationonly discard substantially fewer datapoints when used for quality control purposes ("motion scrubbing"). Finally, both translationonly and rotationonly severely underperform in predicting the full extent of the signal changes and the overall variance explained by motion in functional MRI data. These results suggest that a comprehensive measure, taking into account all available parameters, should be used to characterize subject motion in fMRI.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>25333359</pmid><doi>10.1371/journal.pone.0106498</doi><oa>free_for_read</oa></addata></record> |
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subjects | Adolescent Adult Adults Aged Aged, 80 and over Aging Analysis Artefacts Biology and Life Sciences Brain Brain - diagnostic imaging Brain Mapping Child Child, Preschool Children Corruption Cortex Datasets Experiments Female Functional magnetic resonance imaging Head Head Movements Humans Image Processing, Computer-Assisted Magnetic resonance imaging Magnetic Resonance Imaging - methods Male Medical imaging Medicine and Health Sciences Middle Aged NMR Nuclear magnetic resonance Parameters Pediatrics Quality control Radiography Repositories Software Trajectory analysis Translations Washing Young Adult |
title | Isolated assessment of translation or rotation severely underestimates the effects of subject motion in fMRI data |
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