Comparative transcriptome analysis reveals that lactose acts as an inducer and provides proper carbon sources for enhancing exopolysaccharide yield in the deep-sea bacterium Zunongwangia profunda SM-A87

• Published in: PloS one 2015-02, Vol.10 (2), p.e0115998-e0115998
• Main Authors: Qin, Qi-Long, Li, Yi, Sun, Mei-Ling, Rong, Jin-Cheng, Liu, Sheng-Bo, Chen, Xiu-Lan, Su, Hai-Nan, Zhou, Bai-Cheng, Xie, Bin-Bin, Zhang, Yu-Zhong, Zhang, Xi-Ying
• Format: Article
• Language: English
• Subjects: Bacteria; Biosynthesis; Biotechnology; Carbohydrates; Carbon; Carbon sources; Cellulose; Clusters; Comparative analysis; Culture Media - chemistry; Deep sea; E coli; Ecological effects; Environmental factors; Eps gene; Escherichia coli; Exopolysaccharides; Flavobacteriaceae - drug effects; Flavobacteriaceae - genetics; Flavobacteriaceae - metabolism; Galactose; GDP-mannose; Gene expression; Gene Expression Profiling; Genes; Genomics; Glucose; Gross domestic product; Laboratories; Lactose; Lactose - metabolism; Lactose - pharmacology; Mannose; Multigene Family - genetics; Nitrogen; Oil recovery; Physiological effects; Polysaccharides, Bacterial - metabolism; Precursors; Regulatory mechanisms (biology); Ribonucleic acid; RNA; Up-Regulation - drug effects
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0115998

Many marine bacteria secrete exopolysaccharides (EPSs) that have important ecological and physiological functions. Numerous nutritional and environmental factors influence bacterial EPS production. However, the regulatory mechanisms of EPS production are poorly understood. The deep-sea Bacteroidetes bacterium Zunongwangia profunda SM-A87 can produce high quantities of EPS, and its EPS production is enhanced significantly by lactose. Here, we studied the reasons behind the significant advantage that lactose has over other carbon sources in EPS production in SM-A87. RNA-seq technologies were used to study lactose-regulated genes in SM-A87. The expression level of genes within the EPS gene cluster was up-regulated when lactose was added. Supplement of lactose also influenced the expression of genes located outside the EPS gene cluster that are also involved in EPS biosynthesis. The major glycosyl components of SM-A87 EPS are mannose, glucose and galactose. Genomic metabolic pathway analyses showed that the EPS precursor GDP-mannose can be synthesized from glucose, while the precursor UDP-glucose must be synthesized from galactose. Lactose can provide glucose and galactose simultaneously and prevent glucose inhibition. Lactose can also greatly stimulate the growth of SM-A87. Taken together, lactose acts not only as an inducer but also as a carbohydrate source for EPS production. This research broadens our knowledge of the regulation of EPS production in marine bacteria.