Genetic mapping of MAPK-mediated complex traits Across S. cerevisiae

• Published in: PLoS genetics 2015-01, Vol.11 (1), p.e1004913-e1004913
• Main Authors: Treusch, Sebastian, Albert, Frank W, Bloom, Joshua S, Kotenko, Iulia E, Kruglyak, Leonid
• Format: Article
• Language: English
• Subjects: Biology and Life Sciences; Chromosome Mapping; Confidence intervals; Gene expression; Genetic aspects; Genomics; Genotype; Identification and classification; Kinases; Mitogen-Activated Protein Kinase Kinases - genetics; Mitogen-activated protein kinases; Phenotype; Physiological aspects; Plasmids; Polymorphism, Single Nucleotide; Quantitative trait loci; Quantitative Trait Loci - genetics; Saccharomyces cerevisiae; Signal Transduction - genetics; Studies; Transcription factors; Yeast
• ISSN: 1553-7404; 1553-7390; 1553-7404
• DOI: 10.1371/journal.pgen.1004913

Signaling pathways enable cells to sense and respond to their environment. Many cellular signaling strategies are conserved from fungi to humans, yet their activity and phenotypic consequences can vary extensively among individuals within a species. A systematic assessment of the impact of naturally occurring genetic variation on signaling pathways remains to be conducted. In S. cerevisiae, both response and resistance to stressors that activate signaling pathways differ between diverse isolates. Here, we present a quantitative trait locus (QTL) mapping approach that enables us to identify genetic variants underlying such phenotypic differences across the genetic and phenotypic diversity of S. cerevisiae. Using a Round-robin cross between twelve diverse strains, we identified QTL that influence phenotypes critically dependent on MAPK signaling cascades. Genetic variants under these QTL fall within MAPK signaling networks themselves as well as other interconnected signaling pathways. Finally, we demonstrate how the mapping results from multiple strain background can be leveraged to narrow the search space of causal genetic variants.