The Evolution of the Secreted Regulatory Protein Progranulin

• Published in: PloS one 2015-08, Vol.10 (8), p.e0133749-e0133749
• Main Authors: Palfree, Roger G E, Bennett, Hugh P J, Bateman, Andrew
• Format: Article
• Language: English
• Subjects: Amino Acid Sequence; Amino acids; Animals; Biological activity; Biological evolution; Conservation; Conserved sequence; Databases, Genetic; Dementia; Dementia disorders; Eukaryotes; Evolution; Evolution, Molecular; Evolutionary genetics; Fish; Frontotemporal dementia; Fungi - metabolism; Genes; Genetic aspects; Genomes; Granulin; Growth factors; Haploinsufficiency; Humans; Intercellular Signaling Peptides and Proteins - chemistry; Intercellular Signaling Peptides and Proteins - genetics; Intercellular Signaling Peptides and Proteins - metabolism; Laboratories; Likelihood Functions; Mammals; Metabolism; Modules; Molecular evolution; Molecular Sequence Data; Mutation; Nucleotide sequence; Physiological aspects; Physiology; Plants - metabolism; Polypeptides; Protein Structure, Tertiary; Proteins; Proteolysis; Regulation; Regulatory proteins; Sequence Alignment; Structure-activity relationships; Tumorigenesis; Wound healing
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0133749

Progranulin is a secreted growth factor that is active in tumorigenesis, wound repair, and inflammation. Haploinsufficiency of the human progranulin gene, GRN, causes frontotemporal dementia. Progranulins are composed of chains of cysteine-rich granulin modules. Modules may be released from progranulin by proteolysis as 6kDa granulin polypeptides. Both intact progranulin and some of the granulin polypeptides are biologically active. The granulin module occurs in certain plant proteases and progranulins are present in early diverging metazoan clades such as the sponges, indicating their ancient evolutionary origin. There is only one Grn gene in mammalian genomes. More gene-rich Grn families occur in teleost fish with between 3 and 6 members per species including short-form Grns that have no tetrapod counterparts. Our goals are to elucidate progranulin and granulin module evolution by investigating (i): the origins of metazoan progranulins (ii): the evolutionary relationships between the single Grn of tetrapods and the multiple Grn genes of fish (iii): the evolution of granulin module architectures of vertebrate progranulins (iv): the conservation of mammalian granulin polypeptide sequences and how the conserved granulin amino acid sequences map to the known three dimensional structures of granulin modules. We report that progranulin-like proteins are present in unicellular eukaryotes that are closely related to metazoa suggesting that progranulin is among the earliest extracellular regulatory proteins still employed by multicellular animals. From the genomes of the elephant shark and coelacanth we identified contemporary representatives of a precursor for short-from Grn genes of ray-finned fish that is lost in tetrapods. In vertebrate Grns pathways of exon duplication resulted in a conserved module architecture at the amino-terminus that is frequently accompanied by an unusual pattern of tandem nearly identical module repeats near the carboxyl-terminus. Polypeptide sequence conservation of mammalian granulin modules identified potential structure-activity relationships that may be informative in designing progranulin based therapeutics.