The Phenazine 2-Hydroxy-Phenazine-1-Carboxylic Acid Promotes Extracellular DNA Release and Has Broad Transcriptomic Consequences in Pseudomonas chlororaphis 30-84

• Published in: PloS one 2016-01, Vol.11 (1), p.e0148003-e0148003
• Main Authors: Wang, Dongping, Yu, Jun Myoung, Dorosky, Robert J, Pierson, 3rd, Leland S, Pierson, Elizabeth A
• Format: Article
• Language: English
• Subjects: 60 APPLIED LIFE SCIENCES; Autolysis; Bacteria; Bacterial Proteins - genetics; Bacterial Proteins - metabolism; BASIC BIOLOGICAL SCIENCES; Biofilms; Biological control; Biology and Life Sciences; Carboxylic acids; Cell adhesion; Clusters; Defective mutant; Deoxyribonucleic acid; Derivatives; DNA; DNA, Bacterial - metabolism; Environmental DNA; Gene expression; Gene Expression Profiling; Genes; Genetic aspects; Genomics; Heterocyclic compounds; Holin; Lysis; Multigene Family; Phenazine; Phenazine-1-carboxylic acid; Phenazines - chemistry; Phenazines - isolation & purification; Phenazines - metabolism; Physiological aspects; Physiology; Plant pathology; Pseudomonas; Pseudomonas - chemistry; Pseudomonas - genetics; Pseudomonas - physiology; Pseudomonas aeruginosa; Pseudomonas putida; Pyocins - metabolism; Real-Time Polymerase Chain Reaction; Research and Analysis Methods; Ribonucleic acid; RNA; RNA - chemistry; RNA - isolation & purification; Sequence Analysis, RNA; Spectrophotometry; Studies; Transcriptome
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0148003

Enhanced production of 2-hydroxy-phenazine-1-carboxylic acid (2-OH-PCA) by the biological control strain Pseudomonas chlororaphis 30-84 derivative 30-84O* was shown previously to promote cell adhesion and alter the three-dimensional structure of surface-attached biofilms compared to the wild type. The current study demonstrates that production of 2-OH-PCA promotes the release of extracellular DNA, which is correlated with the production of structured biofilm matrix. Moreover, the essential role of the extracellular DNA in maintaining the mass and structure of the 30-84 biofilm matrix is demonstrated. To better understand the role of different phenazines in biofilm matrix production and gene expression, transcriptomic analyses were conducted comparing gene expression patterns of populations of wild type, 30-84O* and a derivative of 30-84 producing only PCA (30-84PCA) to a phenazine defective mutant (30-84ZN) when grown in static cultures. RNA-Seq analyses identified a group of 802 genes that were differentially expressed by the phenazine producing derivatives compared to 30-84ZN, including 240 genes shared by the two 2-OH-PCA producing derivatives, the wild type and 30-84O*. A gene cluster encoding a bacteriophage-derived pyocin and its lysis cassette was upregulated in 2-OH-PCA producing derivatives. A holin encoded in this gene cluster was found to contribute to the release of eDNA in 30-84 biofilm matrices, demonstrating that the influence of 2-OH-PCA on eDNA production is due in part to cell autolysis as a result of pyocin production and release. The results expand the current understanding of the functions different phenazines play in the survival of bacteria in biofilm-forming communities.