Escherichia coli O104 in Feedlot Cattle Feces: Prevalence, Isolation and Characterization

• Published in: PloS one 2016-03, Vol.11 (3), p.e0152101
• Main Authors: Shridhar, Pragathi B, Noll, Lance W, Shi, Xiaorong, Cernicchiaro, Natalia, Renter, David G, Bai, J, Nagaraja, T G
• Format: Article
• Language: English
• Subjects: Animals; Beads; Beef cattle; Biology and Life Sciences; Bovidae; Cattle; Cattle - microbiology; Cattle Diseases - epidemiology; Cattle Diseases - microbiology; Colonies; Culture; Deoxyribonucleic acid; Disease Outbreaks; Diseases and pests; Distribution; DNA; E coli; Electrophoresis, Gel, Pulsed-Field; Epidemics; Escherichia coli; Escherichia coli - genetics; Escherichia coli - isolation & purification; Escherichia coli Infections - epidemiology; Escherichia coli Infections - microbiology; Escherichia coli Infections - veterinary; Factory farming; Feces; Feces - microbiology; Feedlots; Food Microbiology; Foodborne Diseases - epidemiology; Foodborne Diseases - microbiology; Gel electrophoresis; Genes; Germany - epidemiology; Homology; Humans; Illnesses; Immunomagnetic separation; Intensive farming; Laboratories; Medicine; Medicine and Health Sciences; Microbiology; Multiplexing; Outbreaks; Pathogens; Physiological aspects; Polymerase Chain Reaction; Prevalence; Prevalence studies (Epidemiology); Pulsed-field gel electrophoresis; Pure culture; Rectum; Research and Analysis Methods; Shiga-Toxigenic Escherichia coli - genetics; Shiga-Toxigenic Escherichia coli - isolation & purification; Stx1 gene; Zoonoses
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0152101

Escherichia coli O104:H4, an hybrid pathotype of Shiga toxigenic and enteroaggregative E. coli, involved in a major foodborne outbreak in Germany in 2011, has not been detected in cattle feces. Serogroup O104 with H type other than H4 has been reported to cause human illnesses, but their prevalence and characteristics in cattle have not been reported. Our objectives were to determine the prevalence of E. coli O104 in feces of feedlot cattle, by culture and PCR detection methods, and characterize the isolated strains. Rectal fecal samples from a total of 757 cattle originating from 29 feedlots were collected at a Midwest commercial slaughter plant. Fecal samples, enriched in E. coli broth, were subjected to culture and PCR methods of detection. The culture method involved immunomagnetic separation with O104-specific beads and plating on a selective chromogenic medium, followed by serogroup confirmation of pooled colonies by PCR. If pooled colonies were positive for the wzxO104 gene, then colonies were tested individually to identify wzxO104-positive serogroup and associated genes of the hybrid strains. Extracted DNA from feces were also tested by a multiplex PCR to detect wzxO104-positive serogroup and associated major genes of the O104 hybrid pathotype. Because wzxO104 has been shown to be present in E. coli O8/O9/O9a, wzxO104-positive isolates and extracted DNA from fecal samples were also tested by a PCR targeting wbdDO8/O9/O9a, a gene specific for E. coli O8/O9/O9a serogroups. Model-adjusted prevalence estimates of E. coli O104 (positive for wzxO104 and negative for wbdDO8/O9/O9a) at the feedlot level were 5.7% and 21.2%, and at the sample level were 0.5% and 25.9% by culture and PCR, respectively. The McNemar's test indicated that there was a significant difference (P < 0.01) between the proportions of samples that tested positive for wzxO104 and samples that were positive for wzxO104, but negative for wbdDO8/O9/O9a by PCR and culture methods. A total of 143 isolates, positive for the wzxO104, were obtained in pure culture from 146 positive fecal samples. Ninety-two of the 143 isolates (64.3%) also tested positive for the wbdDO8/O9/O9a, indicating that only 51 (35.7%) isolates truly belonged to the O104 serogroup (positive for wzxO104 and negative for wbdDO8/O9/O9a). All 51 isolates tested negative for eae, and 16 tested positive for stx1 gene of the subtype 1c. Thirteen of the 16 stx1-positive O104 isolates were from one feedlot. The predominant serot