The Mitochondrial Cytochrome Oxidase Subunit I Gene Occurs on a Minichromosome with Extensive Heteroplasmy in Two Species of Chewing Lice, Geomydoecus aurei and Thomomydoecus minor

• Published in: PloS one 2016-09, Vol.11 (9), p.e0162248-e0162248
• Main Authors: Pietan, Lucas L, Spradling, Theresa A, Demastes, James W
• Format: Article
• Language: English
• Subjects: Amino acid sequence; Animals; Biology; Biology and Life Sciences; Chewing; Chromosomes; Conserved sequence; Cytochrome; Cytochrome oxidase; Deoxyribonucleic acid; DNA; DNA, Mitochondrial - genetics; DNA, Mitochondrial - metabolism; Electron Transport Complex IV - genetics; Electron Transport Complex IV - metabolism; Gene sequencing; Genes; Genetic aspects; Genome, Mitochondrial; Genomes; Geomyidae; Heteroplasmy; Inverted repeat; Ischnocera - genetics; Ischnocera - metabolism; Isoleucine; Lice; Mastication; Mitochondrial DNA; Mutation; Oxidase; Pediculus humanus; Phthiraptera; Phylogenetics; Phylogeny; Proteins; Replication origins; Research and Analysis Methods; Sequence Analysis, DNA; Species; Transfer RNA; Trichodectidae; tRNA Ile
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0162248

In animals, mitochondrial DNA (mtDNA) typically occurs as a single circular chromosome with 13 protein-coding genes and 22 tRNA genes. The various species of lice examined previously, however, have shown mitochondrial genome rearrangements with a range of chromosome sizes and numbers. Our research demonstrates that the mitochondrial genomes of two species of chewing lice found on pocket gophers, Geomydoecus aurei and Thomomydoecus minor, are fragmented with the 1,536 base-pair (bp) cytochrome-oxidase subunit I (cox1) gene occurring as the only protein-coding gene on a 1,916-1,964 bp minicircular chromosome in the two species, respectively. The cox1 gene of T. minor begins with an atypical start codon, while that of G. aurei does not. Components of the non-protein coding sequence of G. aurei and T. minor include a tRNA (isoleucine) gene, inverted repeat sequences consistent with origins of replication, and an additional non-coding region that is smaller than the non-coding sequence of other lice with such fragmented mitochondrial genomes. Sequences of cox1 minichromosome clones for each species reveal extensive length and sequence heteroplasmy in both coding and noncoding regions. The highly variable non-gene regions of G. aurei and T. minor have little sequence similarity with one another except for a 19-bp region of phylogenetically conserved sequence with unknown function.