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Fire Usage and Ancient Hominin Detoxification Genes: Protective Ancestral Variants Dominate While Additional Derived Risk Variants Appear in Modern Humans
Studies of the defence capacity of ancient hominins against toxic substances may contribute importantly to the reconstruction of their niche, including their diets and use of fire. Fire usage implies frequent exposure to hazardous compounds from smoke and heated food, known to affect general health...
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Published in: | PloS one 2016-09, Vol.11 (9), p.e0161102-e0161102 |
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description | Studies of the defence capacity of ancient hominins against toxic substances may contribute importantly to the reconstruction of their niche, including their diets and use of fire. Fire usage implies frequent exposure to hazardous compounds from smoke and heated food, known to affect general health and fertility, probably resulting in genetic selection for improved detoxification. To investigate whether such genetic selection occurred, we investigated the alleles in Neanderthals, Denisovans and modern humans at gene polymorphisms well-known to be relevant from modern human epidemiological studies of habitual tobacco smoke exposure and mechanistic evidence. We compared these with the alleles in chimpanzees and gorillas. Neanderthal and Denisovan hominins predominantly possess gene variants conferring increased resistance to these toxic compounds. Surprisingly, we observed the same in chimpanzees and gorillas, implying that less efficient variants are derived and mainly evolved in modern humans. Less efficient variants are observable from the first early Upper Palaeolithic hunter-gatherers onwards. While not clarifying the deep history of fire use, our results highlight the long-term stability of the genes under consideration despite major changes in the hominin dietary niche. Specifically for detoxification gene variants characterised as deleterious by epidemiological studies, our results confirm the predominantly recent appearance reported for deleterious human gene variants, suggesting substantial impact of recent human population history, including pre-Holocene expansions. |
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Fire usage implies frequent exposure to hazardous compounds from smoke and heated food, known to affect general health and fertility, probably resulting in genetic selection for improved detoxification. To investigate whether such genetic selection occurred, we investigated the alleles in Neanderthals, Denisovans and modern humans at gene polymorphisms well-known to be relevant from modern human epidemiological studies of habitual tobacco smoke exposure and mechanistic evidence. We compared these with the alleles in chimpanzees and gorillas. Neanderthal and Denisovan hominins predominantly possess gene variants conferring increased resistance to these toxic compounds. Surprisingly, we observed the same in chimpanzees and gorillas, implying that less efficient variants are derived and mainly evolved in modern humans. Less efficient variants are observable from the first early Upper Palaeolithic hunter-gatherers onwards. While not clarifying the deep history of fire use, our results highlight the long-term stability of the genes under consideration despite major changes in the hominin dietary niche. Specifically for detoxification gene variants characterised as deleterious by epidemiological studies, our results confirm the predominantly recent appearance reported for deleterious human gene variants, suggesting substantial impact of recent human population history, including pre-Holocene expansions.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0161102</identifier><identifier>PMID: 27655273</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Alleles ; Archaeology ; Bioinformatica ; Bioinformatics ; Biology and Life Sciences ; Biomass ; Cancer ; Chimpanzees ; Cytochrome ; Deoxyribonucleic acid ; Detoxification ; Diet ; DNA ; Earth Sciences ; Epidemiology ; EPS ; Evolution ; Exposure ; Fertility ; Food ; Gene expression ; Genes ; Genetic aspects ; Genetic polymorphisms ; Genetic research ; Holocene ; Homo neanderthalensis ; Homo sapiens denisova ; Human populations ; Laboratorium voor Moleculaire biologie ; Laboratory animals ; Laboratory of Molecular Biology ; Leerstoelgroep Toxicologie ; Medicine and Health Sciences ; Mutation ; Neanderthals ; Oxidative stress ; Pan troglodytes ; Plant sciences ; Smoke ; Smoking ; Social Sciences ; Sub-department of Toxicology ; Tobacco ; Tobacco smoke ; Toxic substances ; Toxicologie ; Toxicology</subject><ispartof>PloS one, 2016-09, Vol.11 (9), p.e0161102-e0161102</ispartof><rights>COPYRIGHT 2016 Public Library of Science</rights><rights>2016 Aarts et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. 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Fire usage implies frequent exposure to hazardous compounds from smoke and heated food, known to affect general health and fertility, probably resulting in genetic selection for improved detoxification. To investigate whether such genetic selection occurred, we investigated the alleles in Neanderthals, Denisovans and modern humans at gene polymorphisms well-known to be relevant from modern human epidemiological studies of habitual tobacco smoke exposure and mechanistic evidence. We compared these with the alleles in chimpanzees and gorillas. Neanderthal and Denisovan hominins predominantly possess gene variants conferring increased resistance to these toxic compounds. Surprisingly, we observed the same in chimpanzees and gorillas, implying that less efficient variants are derived and mainly evolved in modern humans. Less efficient variants are observable from the first early Upper Palaeolithic hunter-gatherers onwards. While not clarifying the deep history of fire use, our results highlight the long-term stability of the genes under consideration despite major changes in the hominin dietary niche. Specifically for detoxification gene variants characterised as deleterious by epidemiological studies, our results confirm the predominantly recent appearance reported for deleterious human gene variants, suggesting substantial impact of recent human population history, including pre-Holocene expansions.</description><subject>Alleles</subject><subject>Archaeology</subject><subject>Bioinformatica</subject><subject>Bioinformatics</subject><subject>Biology and Life Sciences</subject><subject>Biomass</subject><subject>Cancer</subject><subject>Chimpanzees</subject><subject>Cytochrome</subject><subject>Deoxyribonucleic acid</subject><subject>Detoxification</subject><subject>Diet</subject><subject>DNA</subject><subject>Earth Sciences</subject><subject>Epidemiology</subject><subject>EPS</subject><subject>Evolution</subject><subject>Exposure</subject><subject>Fertility</subject><subject>Food</subject><subject>Gene expression</subject><subject>Genes</subject><subject>Genetic 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Usage and Ancient Hominin Detoxification Genes: Protective Ancestral Variants Dominate While Additional Derived Risk Variants Appear in Modern Humans</title><author>Aarts, Jac M M J G ; Alink, Gerrit M ; Scherjon, Fulco ; MacDonald, Katharine ; Smith, Alison C ; Nijveen, Harm ; Roebroeks, Wil</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a799t-4a34108af2499d46be1e55ebac3b6ad11a00074a0611c28e0279c2af460555b93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Alleles</topic><topic>Archaeology</topic><topic>Bioinformatica</topic><topic>Bioinformatics</topic><topic>Biology and Life Sciences</topic><topic>Biomass</topic><topic>Cancer</topic><topic>Chimpanzees</topic><topic>Cytochrome</topic><topic>Deoxyribonucleic acid</topic><topic>Detoxification</topic><topic>Diet</topic><topic>DNA</topic><topic>Earth 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diets and use of fire. Fire usage implies frequent exposure to hazardous compounds from smoke and heated food, known to affect general health and fertility, probably resulting in genetic selection for improved detoxification. To investigate whether such genetic selection occurred, we investigated the alleles in Neanderthals, Denisovans and modern humans at gene polymorphisms well-known to be relevant from modern human epidemiological studies of habitual tobacco smoke exposure and mechanistic evidence. We compared these with the alleles in chimpanzees and gorillas. Neanderthal and Denisovan hominins predominantly possess gene variants conferring increased resistance to these toxic compounds. Surprisingly, we observed the same in chimpanzees and gorillas, implying that less efficient variants are derived and mainly evolved in modern humans. Less efficient variants are observable from the first early Upper Palaeolithic hunter-gatherers onwards. While not clarifying the deep history of fire use, our results highlight the long-term stability of the genes under consideration despite major changes in the hominin dietary niche. Specifically for detoxification gene variants characterised as deleterious by epidemiological studies, our results confirm the predominantly recent appearance reported for deleterious human gene variants, suggesting substantial impact of recent human population history, including pre-Holocene expansions.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>27655273</pmid><doi>10.1371/journal.pone.0161102</doi><tpages>e0161102</tpages><orcidid>https://orcid.org/0000-0002-7634-8578</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Alleles Archaeology Bioinformatica Bioinformatics Biology and Life Sciences Biomass Cancer Chimpanzees Cytochrome Deoxyribonucleic acid Detoxification Diet DNA Earth Sciences Epidemiology EPS Evolution Exposure Fertility Food Gene expression Genes Genetic aspects Genetic polymorphisms Genetic research Holocene Homo neanderthalensis Homo sapiens denisova Human populations Laboratorium voor Moleculaire biologie Laboratory animals Laboratory of Molecular Biology Leerstoelgroep Toxicologie Medicine and Health Sciences Mutation Neanderthals Oxidative stress Pan troglodytes Plant sciences Smoke Smoking Social Sciences Sub-department of Toxicology Tobacco Tobacco smoke Toxic substances Toxicologie Toxicology |
title | Fire Usage and Ancient Hominin Detoxification Genes: Protective Ancestral Variants Dominate While Additional Derived Risk Variants Appear in Modern Humans |
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