Quantitative trait locus analysis for spikelet shape-related traits in wild wheat progenitor Aegilops tauschii: Implications for intraspecific diversification and subspecies differentiation

Wild diploid wheat Aegilops tauschii, the D-genome progenitor of common wheat, carries large genetic variation in spikelet and grain morphology. Two differentiated subspecies of Ae. tauschii, subspecies tauschii and strangulata, have been traditionally defined based on differences in spikelet morpho...

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Bibliographic Details
Published in:PloS one 2017-03, Vol.12 (3), p.e0173210-e0173210
Main Authors: Nishijima, Ryo, Okamoto, Yuki, Hatano, Hitoshi, Takumi, Shigeo
Format: Article
Language:English
Subjects:
Aegilops tauschii
Biology and Life Sciences
Chromosome Mapping
Chromosomes
Differentiation
Divergence
Diversification
Gene loci
Gene mapping
Genetic aspects
Genetic Association Studies
Genetic diversity
Genetic Variation
Genetics
Genomes
Genomics
Genotype
Goat grass
Grain
Laboratories
Mapping
Morphology
Phenotype
Plant morphology
Populations
Quantitative Trait Loci
Quantitative Trait, Heritable
Research and Analysis Methods
Science
Triticum
Triticum - genetics
Triticum aestivum
Wheat
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Summary:Wild diploid wheat Aegilops tauschii, the D-genome progenitor of common wheat, carries large genetic variation in spikelet and grain morphology. Two differentiated subspecies of Ae. tauschii, subspecies tauschii and strangulata, have been traditionally defined based on differences in spikelet morphology. Here, we first assessed six spikelet shape-related traits among 199 Ae. tauschii accessions, and found that the accessions belonging to TauL1major lineage produced significantly longer spikes, higher spikelet density, and shorter, narrower spikelets than another major lineage, TauL2, in which the strangulata accessions are included. Next, we performed quantitative trait locus (QTL) analysis of the spikelet and grain shape using three mapping populations derived from interlineage crosses between TauL1 and TauL2 to identify the genetic loci for the morphological variations of the spikelet and grain shape in Ae. tauschii. Three major QTL regions for the examined traits were detected on chromosomes 3D, 4D and 7D. The 3D and 4D QTL regions for several spikelet shape-related traits were conserved in the three mapping populations, which indicated that the 3D and 4D QTLs contribute to divergence of the two major lineages. The 7D QTLs were found only in a mapping population from a cross of the two subspecies, suggesting that these 7D QTLs may be closely related to subspecies differentiation in Ae. tauschii. Thus, QTL analysis for spikelet and grain morphology may provide useful information to elucidate the evolutionary processes of intraspecific differentiation.
ISSN:1932-6203
1932-6203
DOI:10.1371/journal.pone.0173210