A survey of the mycobiota associated with larvae of the black soldier fly (Hermetia illucens) reared for feed production

• Published in: PloS one 2017-08, Vol.12 (8), p.e0182533-e0182533
• Main Authors: Varotto Boccazzi, Ilaria, Ottoboni, Matteo, Martin, Elena, Comandatore, Francesco, Vallone, Lisa, Spranghers, Thomas, Eeckhout, Mia, Mereghetti, Valeria, Pinotti, Luciano, Epis, Sara
• Format: Article
• Language: English
• Subjects: Animal Feed - microbiology; Animal feeding and feeds; Animal sciences; Animals; Aquaculture; Biodiversity; Biology and Life Sciences; Chickens; Contaminants; Data transfer (computers); Diet; Digestive tract; Diptera; DNA, Fungal - analysis; DNA, Ribosomal - analysis; Farming; Feed quality; Feeding; Feeds; Food Microbiology; Food safety; Fungi; Fungi - classification; Fungi - genetics; Fungi - isolation & purification; Gastrointestinal Microbiome; Gastrointestinal tract; Genera; Hermetia illucens; Ingredients; Innovations; Insects; Intestine; Larva - microbiology; Larvae; Livestock; Livestock farming; Livestock feeds; Meals; Medicine and Health Sciences; Microbiota (Symbiotic organisms); Microorganisms; Multivariate analysis; Pediatrics; Phenotypes; Physiological aspects; Pichia - classification; Pichia - isolation & purification; Poultry feed; Protein sources; Raw materials; Research and Analysis Methods; Rhodotorula - classification; Rhodotorula - isolation & purification; RNA, Ribosomal - analysis; rRNA 26S; Security; Sequence Analysis, DNA - methods; Simuliidae - microbiology; Simuliidae - physiology; Species diversity; Studies; Substrates; Toxins; Trichosporon - classification; Trichosporon - isolation & purification; Vegetables; Yeast; Yeasts; Zoology
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0182533

Feed security, feed quality and issues surrounding the safety of raw materials are always of interest to all livestock farmers, feed manufacturers and competent authorities. These concerns are even more important when alternative feed ingredients, new product developments and innovative feeding trends, like insect-meals, are considered. The black soldier fly (Hermetia illucens) is considered a good candidate to be used as feed ingredient for aquaculture and other farm animals, mainly as an alternative protein source. Data on transfer of contaminants from different substrates to the insects, as well as the possible occurrence of toxin-producing fungi in the gut of non-processed insects are very limited. Accordingly, we investigated the impact of the substrate/diet on the intestinal mycobiota of H. illucens larvae using culture-dependent approaches (microbiological analyses, molecular identification through the typing of isolates and the sequencing of the 26S rRNA D1/D2 domain) and amplicon-based next-generation sequencing (454 pyrosequencing). We fed five groups of H. illucens larvae at the third growing stage on two substrates: chicken feed and/or vegetable waste, provided at different timings. The obtained results indicated that Pichia was the most abundant genus associated with the larvae fed on vegetable waste, whereas Trichosporon, Rhodotorula and Geotrichum were the most abundant genera in the larvae fed on chicken feed only. Differences in the fungal communities were highlighted, suggesting that the type of substrate selects diverse yeast and mold genera, in particular vegetable waste is associated with a greater diversity of fungal species compared to chicken feed only. A further confirmation of the significant influence of diet on the mycobiota is the fact that no operational taxonomic unit common to all groups of larvae was detected. Finally, the killer phenotype of isolated yeasts was tested, showing the inhibitory activity of just one species against sensitive strains, out of the 11 tested species.