Deciphering the regulation of P2X4 receptor channel gating by ivermectin using Markov models

• Published in: PLoS computational biology 2017-07, Vol.13 (7), p.e1005643-e1005643
• Main Authors: Mackay, Laurent, Zemkova, Hana, Stojilkovic, Stanko S, Sherman, Arthur, Khadra, Anmar
• Format: Article
• Language: English
• Subjects: Adenosine Triphosphate - metabolism; Algorithms; Allosteric properties; Analysis; Animal models; Antiparasitic agents; ATP; Binding Sites; Biology and Life Sciences; Channel gating; Conductance; Deactivation; Desensitization; Dosage and administration; Drug interactions; Health aspects; HEK293 Cells; Humans; Ion Channel Gating - drug effects; Ion Channel Gating - physiology; Ion channels; Ivermectin; Ivermectin - metabolism; Kinetics; Ligands; Mammals; Markov Chains; Markov processes; Mathematical models; Medicine and Health Sciences; Neurosciences; Patch-Clamp Techniques; Physical Sciences; Physiology; Receptors, Purinergic P2X4 - drug effects; Receptors, Purinergic P2X4 - metabolism; Receptors, Purinergic P2X4 - physiology; Research and Analysis Methods; Resistance; Social Sciences
• ISSN: 1553-7358; 1553-734X; 1553-7358
• DOI: 10.1371/journal.pcbi.1005643

The P2X4 receptor (P2X4R) is a member of a family of purinergic channels activated by extracellular ATP through three orthosteric binding sites and allosterically regulated by ivermectin (IVM), a broad-spectrum antiparasitic agent. Treatment with IVM increases the efficacy of ATP to activate P2X4R, slows both receptor desensitization during sustained ATP application and receptor deactivation after ATP washout, and makes the receptor pore permeable to NMDG+, a large organic cation. Previously, we developed a Markov model based on the presence of one IVM binding site, which described some effects of IVM on rat P2X4R. Here we present two novel models, both with three IVM binding sites. The simpler one-layer model can reproduce many of the observed time series of evoked currents, but does not capture well the short time scales of activation, desensitization, and deactivation. A more complex two-layer model can reproduce the transient changes in desensitization observed upon IVM application, the significant increase in ATP-induced current amplitudes at low IVM concentrations, and the modest increase in the unitary conductance. In addition, the two-layer model suggests that this receptor can exist in a deeply inactivated state, not responsive to ATP, and that its desensitization rate can be altered by each of the three IVM binding sites. In summary, this study provides a detailed analysis of P2X4R kinetics and elucidates the orthosteric and allosteric mechanisms regulating its channel gating.