Characterization of a cold-active, detergent-stable metallopeptidase purified from Bacillus sp. S1DI 10 using Response Surface Methodology

• Published in: PloS one 2019-05, Vol.14 (5), p.e0216990-e0216990
• Main Authors: Singh, Drishtant, Thakur, Sharad, Thayil, Seema Madhumal, Kesavan, Anup Kumar
• Format: Article
• Language: English
• Subjects: Alcohol; Bacillus; Bacillus - enzymology; Bacteria; Biochemistry; Biology and Life Sciences; Chaperones; Cloning; Cold Temperature; Dairy products industry; Deoxyribonucleic acid; Detergents; Detergents - chemistry; DNA; DNA, Ribosomal - analysis; E coli; EDTA; Enzymatic activity; Enzyme activity; Enzyme Stability; Enzymes; Escherichia coli; Gram-positive bacteria; Hydrogen-Ion Concentration; Hydrolases; Independent variables; Ions; Iron; Iron - chemistry; Lipase; Manganese - chemistry; Manganese ions; Medicine and Health Sciences; Metal ions; Metalloproteases - metabolism; Metalloproteinase; Metalloproteins; Metals; Methods; Microorganisms; Milk; Molecular biology; Morphology; Organic solvents; Peptidase; Peptidases; Peptides; Phosphatases; Phylogeny; Physical Sciences; Proteases; Psychrophiles; Recombinant proteins; Recombinant Proteins - metabolism; Research and Analysis Methods; Response surface methodology; Response surfaces (Statistics); RNA, Ribosomal, 16S - analysis; rRNA 16S; Scanning electron microscopy; Skim milk; Sodium; Sodium dodecyl sulfate; Sodium lauryl sulfate; Solvents; Solvents - chemistry; Sulfates; Surface active agents; Temperature; Textiles; Water; Water analysis; Water sampling
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0216990

The colder regions of Earth are inhabited by cold-adapted microorganisms designated as psychrophiles that are known to produce cold-active enzymes, such as peptidases, chaperones, lipases, cellulases, and phosphatases. These types of enzymes are a major part of the market of industrial enzymes. Bacteria isolated from water samples collected from the Chamba region in the Himalayas were screened for peptidase production using skim milk agar plates. Among the peptidase-producing bacteria isolated, 20% of the isolates exhibited fast growth and maximum zones of clearance, and thus, were used for further studies. The 16S rDNA sequence analysis of isolate S1DI 10 identified it as a Bacillus sp. The peptidase was cloned in pET28a vector and expressed in Escherichia coli BL21(DE3) and the His-tagged recombinant protein was purified using Ni-NTA column. The purified peptidase of SIDI 10 was found to be an alkaline, cold-active peptidase with optimal enzyme activity at 10°C and pH 8. An approach of one variable at a time was used to further study the effect of various metal ions, organic solvents and detergents on the peptidase enzyme. The peptidase activity was enhanced in the presence of Fe2+ and Mn2+ (metal ions), hexane (organic solvent), SDS- sodium dodecyl sulfate (anionic detergent) and Tween 80 (nonionic detergent). Response surface methodology (RSM) was used to determine the cumulative effect of these five variables. A 25 full factorial central composite design was applied for the five independent variables to determine the optimal combinations of these constituents at the maximum peptidase activity.