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MicroRNA profiling in canine multicentric lymphoma
Lymphoma is the most common hematopoietic tumour in dogs and is remarkably similar to the human disease. Tumour biomarker discovery is providing new tools for diagnostics and predicting therapeutic response and clinical outcome. MicroRNAs are small non-coding RNAs that participate in post-transcript...
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Published in: | PloS one 2019-12, Vol.14 (12), p.e0226357-e0226357 |
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description | Lymphoma is the most common hematopoietic tumour in dogs and is remarkably similar to the human disease. Tumour biomarker discovery is providing new tools for diagnostics and predicting therapeutic response and clinical outcome. MicroRNAs are small non-coding RNAs that participate in post-transcriptional gene regulation and their aberrant expression can impact genes involved in cancer. The aim of this study was to characterize microRNA expression in lymph nodes and plasma from dogs with multicentric B or T cell lymphoma compared to healthy control dogs. We further compared expression between lymph nodes and corresponding plasma samples and assessed changes in expression at relapse compared to time of diagnosis. Lastly, we investigated microRNAs for association with clinical outcome in patients treated with CHOP chemotherapy. A customized PCR array was utilized to profile 38 canine target microRNAs. Quantification was performed using real time RT-qPCR and relative expression was determined by the delta-delta Ct method. In lymph nodes, there were 16 microRNAs with significantly altered expression for B cell lymphoma and 9 for T cell lymphoma. In plasma, there were 15 microRNAs altered for B cell lymphoma and 3 for T cell lymphoma. The majority of microRNAs did not have correlated expression between lymph node and plasma and only 8 microRNAs were significantly different between diagnosis and relapse. For B cell lymphoma, 8 microRNAs had differential expression in the non-remission group compared to dogs that completed CHOP in complete remission. Four of these microRNAs were also altered in patients that died prior to one-year. Kaplan-Meier survival curves for high versus low microRNA expression revealed that 10 microRNAs were correlated with progression-free survival and 3 with overall survival. This study highlights microRNAs of interest for canine multicentric lymphoma. Future goals include development of microRNA panels that may be useful as biomarkers with the intent to provide improved outcome prediction to veterinary cancer patients. |
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Tumour biomarker discovery is providing new tools for diagnostics and predicting therapeutic response and clinical outcome. MicroRNAs are small non-coding RNAs that participate in post-transcriptional gene regulation and their aberrant expression can impact genes involved in cancer. The aim of this study was to characterize microRNA expression in lymph nodes and plasma from dogs with multicentric B or T cell lymphoma compared to healthy control dogs. We further compared expression between lymph nodes and corresponding plasma samples and assessed changes in expression at relapse compared to time of diagnosis. Lastly, we investigated microRNAs for association with clinical outcome in patients treated with CHOP chemotherapy. A customized PCR array was utilized to profile 38 canine target microRNAs. Quantification was performed using real time RT-qPCR and relative expression was determined by the delta-delta Ct method. In lymph nodes, there were 16 microRNAs with significantly altered expression for B cell lymphoma and 9 for T cell lymphoma. In plasma, there were 15 microRNAs altered for B cell lymphoma and 3 for T cell lymphoma. The majority of microRNAs did not have correlated expression between lymph node and plasma and only 8 microRNAs were significantly different between diagnosis and relapse. For B cell lymphoma, 8 microRNAs had differential expression in the non-remission group compared to dogs that completed CHOP in complete remission. Four of these microRNAs were also altered in patients that died prior to one-year. Kaplan-Meier survival curves for high versus low microRNA expression revealed that 10 microRNAs were correlated with progression-free survival and 3 with overall survival. This study highlights microRNAs of interest for canine multicentric lymphoma. Future goals include development of microRNA panels that may be useful as biomarkers with the intent to provide improved outcome prediction to veterinary cancer patients.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0226357</identifier><identifier>PMID: 31826004</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Animals ; Antineoplastic Combined Chemotherapy Protocols - therapeutic use ; B-cell lymphoma ; Biology and life sciences ; Biomarkers ; Biomarkers, Tumor - genetics ; Biomarkers, Tumor - metabolism ; Cancer ; Cancer therapies ; Chemotherapy ; Classification ; Comparative analysis ; Consent ; Cyclophosphamide - therapeutic use ; Diagnosis ; Dog Diseases - diagnosis ; Dog Diseases - drug therapy ; Dog Diseases - genetics ; Dog Diseases - mortality ; Dogs ; Doxorubicin - therapeutic use ; Ethylenediaminetetraacetic acid ; Female ; Gene expression ; Gene Expression Regulation, Neoplastic ; Gene regulation ; Genes ; Genetic aspects ; Genetic transcription ; Health aspects ; Immunophenotyping ; Kaplan-Meier Estimate ; Lymph nodes ; Lymph Nodes - metabolism ; Lymphatic system ; Lymphocytes ; Lymphocytes T ; Lymphoma ; Lymphoma, B-Cell - diagnosis ; Lymphoma, B-Cell - drug therapy ; Lymphoma, B-Cell - genetics ; Lymphoma, B-Cell - mortality ; Lymphoma, T-Cell - diagnosis ; Lymphoma, T-Cell - drug therapy ; Lymphoma, T-Cell - genetics ; Lymphoma, T-Cell - mortality ; Male ; Medical diagnosis ; Medical prognosis ; Medicine and Health Sciences ; MicroRNA ; MicroRNAs ; MicroRNAs - blood ; MicroRNAs - metabolism ; miRNA ; Neoplasm Recurrence, Local ; Nodes ; Non-Hodgkin's lymphomas ; Post-transcription ; Predictions ; Prednisone - therapeutic use ; Prognosis ; Progression-Free Survival ; Remission ; Ribonucleic acid ; RNA ; Survival ; T cells ; T-cell lymphoma ; Treatment Outcome ; Tumors ; Veterinary colleges ; Vincristine ; Vincristine - therapeutic use</subject><ispartof>PloS one, 2019-12, Vol.14 (12), p.e0226357-e0226357</ispartof><rights>COPYRIGHT 2019 Public Library of Science</rights><rights>2019 Craig et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2019 Craig et al 2019 Craig et al</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c692t-6a40ed60eaca0ae727ced9acc33cd1add352818185a81dd365330591687df1973</citedby><cites>FETCH-LOGICAL-c692t-6a40ed60eaca0ae727ced9acc33cd1add352818185a81dd365330591687df1973</cites><orcidid>0000-0002-7965-7149 ; 0000-0003-4798-4249</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2324896108/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2324896108?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31826004$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Rouault, Jean-Pierre</contributor><creatorcontrib>Craig, Karlee K L</creatorcontrib><creatorcontrib>Wood, Geoffrey A</creatorcontrib><creatorcontrib>Keller, Stefan M</creatorcontrib><creatorcontrib>Mutsaers, Anthony J</creatorcontrib><creatorcontrib>Wood, R Darren</creatorcontrib><title>MicroRNA profiling in canine multicentric lymphoma</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Lymphoma is the most common hematopoietic tumour in dogs and is remarkably similar to the human disease. Tumour biomarker discovery is providing new tools for diagnostics and predicting therapeutic response and clinical outcome. MicroRNAs are small non-coding RNAs that participate in post-transcriptional gene regulation and their aberrant expression can impact genes involved in cancer. The aim of this study was to characterize microRNA expression in lymph nodes and plasma from dogs with multicentric B or T cell lymphoma compared to healthy control dogs. We further compared expression between lymph nodes and corresponding plasma samples and assessed changes in expression at relapse compared to time of diagnosis. Lastly, we investigated microRNAs for association with clinical outcome in patients treated with CHOP chemotherapy. A customized PCR array was utilized to profile 38 canine target microRNAs. Quantification was performed using real time RT-qPCR and relative expression was determined by the delta-delta Ct method. 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Future goals include development of microRNA panels that may be useful as biomarkers with the intent to provide improved outcome prediction to veterinary cancer patients.</description><subject>Animals</subject><subject>Antineoplastic Combined Chemotherapy Protocols - therapeutic use</subject><subject>B-cell lymphoma</subject><subject>Biology and life sciences</subject><subject>Biomarkers</subject><subject>Biomarkers, Tumor - genetics</subject><subject>Biomarkers, Tumor - metabolism</subject><subject>Cancer</subject><subject>Cancer therapies</subject><subject>Chemotherapy</subject><subject>Classification</subject><subject>Comparative analysis</subject><subject>Consent</subject><subject>Cyclophosphamide - therapeutic use</subject><subject>Diagnosis</subject><subject>Dog Diseases - diagnosis</subject><subject>Dog Diseases - drug therapy</subject><subject>Dog Diseases - genetics</subject><subject>Dog Diseases - mortality</subject><subject>Dogs</subject><subject>Doxorubicin - therapeutic use</subject><subject>Ethylenediaminetetraacetic acid</subject><subject>Female</subject><subject>Gene expression</subject><subject>Gene Expression Regulation, Neoplastic</subject><subject>Gene regulation</subject><subject>Genes</subject><subject>Genetic aspects</subject><subject>Genetic transcription</subject><subject>Health aspects</subject><subject>Immunophenotyping</subject><subject>Kaplan-Meier Estimate</subject><subject>Lymph nodes</subject><subject>Lymph Nodes - metabolism</subject><subject>Lymphatic system</subject><subject>Lymphocytes</subject><subject>Lymphocytes T</subject><subject>Lymphoma</subject><subject>Lymphoma, B-Cell - diagnosis</subject><subject>Lymphoma, B-Cell - drug therapy</subject><subject>Lymphoma, B-Cell - genetics</subject><subject>Lymphoma, B-Cell - mortality</subject><subject>Lymphoma, T-Cell - diagnosis</subject><subject>Lymphoma, T-Cell - drug therapy</subject><subject>Lymphoma, T-Cell - genetics</subject><subject>Lymphoma, T-Cell - mortality</subject><subject>Male</subject><subject>Medical diagnosis</subject><subject>Medical prognosis</subject><subject>Medicine and Health Sciences</subject><subject>MicroRNA</subject><subject>MicroRNAs</subject><subject>MicroRNAs - blood</subject><subject>MicroRNAs - metabolism</subject><subject>miRNA</subject><subject>Neoplasm Recurrence, Local</subject><subject>Nodes</subject><subject>Non-Hodgkin's lymphomas</subject><subject>Post-transcription</subject><subject>Predictions</subject><subject>Prednisone - therapeutic use</subject><subject>Prognosis</subject><subject>Progression-Free Survival</subject><subject>Remission</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>Survival</subject><subject>T cells</subject><subject>T-cell lymphoma</subject><subject>Treatment Outcome</subject><subject>Tumors</subject><subject>Veterinary colleges</subject><subject>Vincristine</subject><subject>Vincristine - therapeutic use</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNqNkkuP0zAUhSMEYoaBf4AgEhKCRYsfsZNskKoRj0oDIw2PrXVrO6krxw5xgph_j9OmowbNgniR13ePfe49SfIcoyWmOX6380PnwC5b7_QSEcIpyx8k57ikZMEJog9Pns-SJyHsEGK04PxxckZxQThC2XlCvhjZ-Zuvq7TtfGWscXVqXCrBGafTZrC9kdr1nZGpvW3arW_gafKoAhv0s-l-kfz4-OH75efF1fWn9eXqaiF5SfoFhwxpxZEGCQh0TnKpVQlSUioVBqUoIwWOi0GB4xtnlCJWYl7kqsJlTi-Slwfd1vogJrtBEEqyouQYFZFYHwjlYSfazjTQ3QoPRuw_-K4W0EUDVgvMdZGRzXjlGWhW8gwrCQXb5DR2U0Wt99Nuw6bRam8a7Ex0_seZraj9b8FLxBgfj_tmEuj8r0GHXjQmSG0tOO2H_bkZPaKv_kHvdzdRNUQDxlU-7itHUbHiKA6Q4XzUWt5DxaV0Y2TMRhyqnhe8nRVEptd_-hqGEMT6283_s9c_5-zrE3arwfbb4O3QG-_CHMwOYAxeCJ2u7pqMkRijfeyGGKMtpmjHshenA7orOmaZ_gWDw_Ip</recordid><startdate>20191211</startdate><enddate>20191211</enddate><creator>Craig, Karlee K L</creator><creator>Wood, Geoffrey A</creator><creator>Keller, Stefan M</creator><creator>Mutsaers, Anthony J</creator><creator>Wood, R Darren</creator><general>Public Library of Science</general><general>Public Library of Science (PLoS)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IOV</scope><scope>ISR</scope><scope>3V.</scope><scope>7QG</scope><scope>7QL</scope><scope>7QO</scope><scope>7RV</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TG</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB.</scope><scope>KB0</scope><scope>KL.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>M7S</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PATMY</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-7965-7149</orcidid><orcidid>https://orcid.org/0000-0003-4798-4249</orcidid></search><sort><creationdate>20191211</creationdate><title>MicroRNA profiling in canine multicentric lymphoma</title><author>Craig, Karlee K L ; Wood, Geoffrey A ; Keller, Stefan M ; Mutsaers, Anthony J ; Wood, R Darren</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c692t-6a40ed60eaca0ae727ced9acc33cd1add352818185a81dd365330591687df1973</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Animals</topic><topic>Antineoplastic Combined Chemotherapy Protocols - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Craig, Karlee K L</au><au>Wood, Geoffrey A</au><au>Keller, Stefan M</au><au>Mutsaers, Anthony J</au><au>Wood, R Darren</au><au>Rouault, Jean-Pierre</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>MicroRNA profiling in canine multicentric lymphoma</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2019-12-11</date><risdate>2019</risdate><volume>14</volume><issue>12</issue><spage>e0226357</spage><epage>e0226357</epage><pages>e0226357-e0226357</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Lymphoma is the most common hematopoietic tumour in dogs and is remarkably similar to the human disease. Tumour biomarker discovery is providing new tools for diagnostics and predicting therapeutic response and clinical outcome. MicroRNAs are small non-coding RNAs that participate in post-transcriptional gene regulation and their aberrant expression can impact genes involved in cancer. The aim of this study was to characterize microRNA expression in lymph nodes and plasma from dogs with multicentric B or T cell lymphoma compared to healthy control dogs. We further compared expression between lymph nodes and corresponding plasma samples and assessed changes in expression at relapse compared to time of diagnosis. Lastly, we investigated microRNAs for association with clinical outcome in patients treated with CHOP chemotherapy. A customized PCR array was utilized to profile 38 canine target microRNAs. Quantification was performed using real time RT-qPCR and relative expression was determined by the delta-delta Ct method. In lymph nodes, there were 16 microRNAs with significantly altered expression for B cell lymphoma and 9 for T cell lymphoma. In plasma, there were 15 microRNAs altered for B cell lymphoma and 3 for T cell lymphoma. The majority of microRNAs did not have correlated expression between lymph node and plasma and only 8 microRNAs were significantly different between diagnosis and relapse. For B cell lymphoma, 8 microRNAs had differential expression in the non-remission group compared to dogs that completed CHOP in complete remission. Four of these microRNAs were also altered in patients that died prior to one-year. Kaplan-Meier survival curves for high versus low microRNA expression revealed that 10 microRNAs were correlated with progression-free survival and 3 with overall survival. This study highlights microRNAs of interest for canine multicentric lymphoma. Future goals include development of microRNA panels that may be useful as biomarkers with the intent to provide improved outcome prediction to veterinary cancer patients.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>31826004</pmid><doi>10.1371/journal.pone.0226357</doi><tpages>e0226357</tpages><orcidid>https://orcid.org/0000-0002-7965-7149</orcidid><orcidid>https://orcid.org/0000-0003-4798-4249</orcidid><oa>free_for_read</oa></addata></record> |
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recordid | cdi_plos_journals_2324896108 |
source | Publicly Available Content Database; PubMed Central |
subjects | Animals Antineoplastic Combined Chemotherapy Protocols - therapeutic use B-cell lymphoma Biology and life sciences Biomarkers Biomarkers, Tumor - genetics Biomarkers, Tumor - metabolism Cancer Cancer therapies Chemotherapy Classification Comparative analysis Consent Cyclophosphamide - therapeutic use Diagnosis Dog Diseases - diagnosis Dog Diseases - drug therapy Dog Diseases - genetics Dog Diseases - mortality Dogs Doxorubicin - therapeutic use Ethylenediaminetetraacetic acid Female Gene expression Gene Expression Regulation, Neoplastic Gene regulation Genes Genetic aspects Genetic transcription Health aspects Immunophenotyping Kaplan-Meier Estimate Lymph nodes Lymph Nodes - metabolism Lymphatic system Lymphocytes Lymphocytes T Lymphoma Lymphoma, B-Cell - diagnosis Lymphoma, B-Cell - drug therapy Lymphoma, B-Cell - genetics Lymphoma, B-Cell - mortality Lymphoma, T-Cell - diagnosis Lymphoma, T-Cell - drug therapy Lymphoma, T-Cell - genetics Lymphoma, T-Cell - mortality Male Medical diagnosis Medical prognosis Medicine and Health Sciences MicroRNA MicroRNAs MicroRNAs - blood MicroRNAs - metabolism miRNA Neoplasm Recurrence, Local Nodes Non-Hodgkin's lymphomas Post-transcription Predictions Prednisone - therapeutic use Prognosis Progression-Free Survival Remission Ribonucleic acid RNA Survival T cells T-cell lymphoma Treatment Outcome Tumors Veterinary colleges Vincristine Vincristine - therapeutic use |
title | MicroRNA profiling in canine multicentric lymphoma |
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