Temporal transcriptome analysis suggest modulation of multiple pathways and gene network involved in cell-cell interaction during early phase of high altitude exposure

• Published in: PloS one 2020-09, Vol.15 (9), p.e0238117-e0238117
• Main Authors: Gaur, Priya, Saini, Supriya, Ray, Koushik, Asanbekovna, Kushubakova Nadira, Akunov, Almaz, Maripov, Abdirashit, Sarybaev, Akpay, Singh, Shashi Bala, Kumar, Bhuvnesh, Vats, Praveen
• Format: Article
• Language: English
• Subjects: Altitude; Altitude physiology; Biology and Life Sciences; Biomedical research; Blood coagulation; Blood pressure; Cell interactions; Clustering; Coagulation; Computer and Information Sciences; Edema; Exposure; Gene expression; Genes; Genetic aspects; Genetic research; Heart rate; Hemoglobin; High altitude; High-altitude environments; Homeostasis; Hypoxia; Immune response; Interactive control; Medicine and Health Sciences; Oxygen; Oxygen saturation; Perturbation; Physiological aspects; Physiology; Pulmonary arteries; Questionnaires; Research and analysis methods; Transcription (Genetics); Veins & arteries
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0238117

High altitude (HA) conditions induce several physiological and molecular changes, prevalent in individuals who are unexposed to this environment. Individuals exposed towards HA hypoxia yields physiological and molecular orchestration to maintain adequate tissue oxygen delivery and supply at altitude. This study aimed to understand the temporal changes at altitude of 4,111m. Physiological parameters and transcriptome study was conducted at high altitude day 3, 7, 14 and 21. We observed changes in differentially expressed gene (DEG) at high altitude time points along with altered BP, HR, SpO.sub.2, mPAP. Physiological changes and unsupervised learning of DEG's discloses high altitude day 3 as distinct time point. Gene enrichment analysis of ontologies and pathways indicate cellular dynamics and immune response involvement in early day exposure and later stable response. Major clustering of genes involved in cellular dynamics deployed into broad categories: cell-cell interaction, blood signaling, coagulation system, and cellular process. Our data reveals genes and pathways perturbed for conditions like vascular remodeling, cellular homeostasis. In this study we found the nodal point of the gene interactive network and candidate gene controlling many cellular interactive pathways VIM, CORO1A, CD37, STMN1, RHOC, PDE7B, NELL1, NRP1 and TAGLN and the most significant among them i.e. VIM gene was identified as top hub gene. This study suggests a unique physiological and molecular perturbation likely to play a critical role in high altitude associated pathophysiological condition during early exposure compared to later time points.