Multi-trait and multi-environment Bayesian analysis to predict the G x E interaction in flood-irrigated rice

• Published in: PloS one 2022-05, Vol.17 (5), p.e0259607-e0259607
• Main Authors: da Silva Júnior, Antônio Carlos, Sant'Anna, Isabela de Castro, Silva Siqueira, Michele Jorge, Cruz, Cosme Damião, Azevedo, Camila Ferreira, Nascimento, Moyses, Soares, Plínio César
• Format: Article
• Language: English
• Subjects: Agricultural production; Algorithms; Bayes Theorem; Bayesian analysis; Bayesian statistical decision theory; Biology and Life Sciences; Biometrics; Brazil; Cereal crops; Crop yield; Crop yields; Design of experiments; Edible Grain; Evaluation; Experimental design; Experiments; Flood predictions; Floods; Flowering; Genetic improvement; Genotype; Genotype & phenotype; Genotypes; Grain; Humidity; Management; Markov chains; Mathematical models; Modelling; Oryza - genetics; Parameter robustness; Phenotype; Plant breeding; Plant Breeding - methods; Research and Analysis Methods; Rice
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0259607

The biggest challenge for the reproduction of flood-irrigated rice is to identify superior genotypes that present development of high-yielding varieties with specific grain qualities, resistance to abiotic and biotic stresses in addition to superior adaptation to the target environment. Thus, the objectives of this study were to propose a multi-trait and multi-environment Bayesian model to estimate genetic parameters for the flood-irrigated rice crop. To this end, twenty-five rice genotypes belonging to the flood-irrigated rice breeding program were evaluated. Grain yield and flowering were evaluated in the agricultural year 2017/2018. The experimental design used in all experiments was a randomized block design with three replications. The Markov Chain Monte Carlo algorithm was used to estimate genetic parameters and genetic values. The flowering is highly heritable by the Bayesian credibility interval: h2 = 0.039-0.80, and 0.02-0.91, environment 1 and 2, respectively. The genetic correlation between traits was significantly different from zero in the two environments (environment 1: -0.80 to 0.74; environment 2: -0.82 to 0.86. The relationship of CVe and CVg higher for flowering in the reduced model (CVg/CVe = 5.83 and 13.98, environments 1 and 2, respectively). For the complete model, this trait presented an estimate of the relative variation index of: CVe = 4.28 and 4.21, environments 1 and 2, respectively. In summary, the multi-trait and multi-environment Bayesian model allowed a reliable estimate of the genetic parameter of flood-irrigated rice. Bayesian analyzes provide robust inference of genetic parameters. Therefore, we recommend this model for genetic evaluation of flood-irrigated rice genotypes, and their generalization, in other crops. Precise estimates of genetic parameters bring new perspectives on the application of Bayesian methods to solve modeling problems in the genetic improvement of flood-irrigated rice.