AngioMT: A MATLAB based 2D image-to-physics tool to predict oxygen transport in vascularized microphysiological systems

• Published in: PloS one 2024-05, Vol.19 (5), p.e0299160-e0299160
• Main Authors: Mathur, Tanmay, Tronolone, James J, Jain, Abhishek
• Format: Article
• Language: English
• Subjects: Angiogenesis; Animals; Biological Transport; Biology and Life Sciences; Biosensors; Boundary conditions; Computer and Information Sciences; Computer programs; Drug discovery; Finite element method; Humans; Hydrogels; Image acquisition; Image processing; International economic relations; Matlab; Medical equipment and supplies industry; Medical test kit industry; Medicine and Health Sciences; Microcirculation; Microphysiological Systems; Microscopy; Microvasculature; Microvessels - diagnostic imaging; Microvessels - metabolism; Models, Biological; Neovascularization, Physiologic; Nutrients; Oxygen; Oxygen - metabolism; Performance prediction; Physical Sciences; Physics; Physiological aspects; Physiological research; Physiological transport; Physiology; Programming languages; Reaction mechanisms; Research and Analysis Methods; Software; Transport phenomena
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0299160

Microphysiological models (MPS) are increasingly getting recognized as in vitro preclinical systems of pathophysiology and drug discovery. However, there is also a growing need to adapt and advance MPS to include the physiological contributions of the capillary vascular dynamics, because they undergo angiogenesis or vasculogenesis to deliver soluble oxygen and nutrients to its organs. Currently, the process of formation of microvessels in MPS is measured arbitrarily, and vascularized MPS do not include oxygen measurements in their analysis. Sensing and measuring tissue oxygen delivery is extremely difficult because it requires access to opaque and deep tissue, and/or requires extensive integration of biosensors that makes such systems impractical to use in the real world. Here, a finite element method-based oxygen transport program, called AngioMT, is built in MATLAB. AngioMT processes the routinely acquired 2D confocal images of microvascular networks in vitro and solves physical equations of diffusion-reaction dominated oxygen transport phenomena. This user-friendly image-to-physics transition in AngioMT is an enabling tool of MPS analysis because unlike the averaged morphological measures of vessels, it provides information of the spatial transport of oxygen both within the microvessels and the surrounding tissue regions. Further, it solves the more complex higher order reaction mechanisms which also improve the physiological relevance of this tool when compared directly against in vivo measurements. Finally, the program is applied in a multicellular vascularized MPS by including the ability to define additional organ/tissue subtypes in complex co-cultured systems. Therefore, AngioMT serves as an analytical tool to enhance the predictive power and performance of MPS that incorporate microcirculation.