In vitro synthesis and biochemical characterization of acyl-homoserine lactone synthase and its deletion mutant

• Published in: PloS one 2024-05, Vol.19 (5), p.e0304331
• Main Authors: Jeong, Yechan, Moon, Sunwoo, Shin, Jae-Hwa
• Format: Article
• Language: English
• Subjects: Acyltransferases - chemistry; Acyltransferases - genetics; Acyltransferases - metabolism; Amino Acid Sequence; Bacteria; Bacterial Proteins - chemistry; Bacterial Proteins - genetics; Bacterial Proteins - metabolism; Biochemical characteristics; Biochemistry; Biological products; Catalytic Domain; Cloning; Comparative analysis; Conservation; Deletion; Deletion mutant; Enzymatic activity; Enzyme activity; Enzymes; Gene deletion; Gene expression; Gene manipulation; Genes; Genetic engineering; Gram-negative bacteria; Ligases; Mutants; Protein biosynthesis; Protein structure; Protein synthesis; Proteins; Quorum sensing; Quorum Sensing - genetics; Sequence Deletion; Serratia - enzymology; Serratia - genetics; Substrate preferences; Substrates; Tertiary structure
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0304331

Quorum sensing can induce density-dependent gene expressions that cause various problems. For quorum-sensing inhibition, fundamental solutions such as gene manipulation are required, and acyl-homoserine lactone synthase (AHL synthase), which synthesizes the universal quorum-sensing signal of gram-negative bacteria, can be used as a target. In this study, researchers synthesized His-tagged AHL synthase and its deletion mutant that lacks the active site and compared their biochemical characteristics. His-YpeI, the 6x His-tagged AHL synthase of Serratia fonticola, and His-ΔYpeI, its deletion mutant, were designed, and their property conservation were examined using in silico projection tools. For in vitro synthesis of enzymes, the His-YpeI CFPS template was synthesized by in vitro gene synthesis, and the His-ΔYpeI CFPS template was obtained by deletion PCR. CFPS was performed and the products were purified with the 6x His-tag. The enzymes' properties were compared using an enzymatic assay. The bioinformatic analysis confirmed the conservation of biochemical properties between 6x His-tagged and untagged enzymes, including helix-turn-helix interactions, hydropathy profiles, and tertiary structure between His-YpeI and YpeI and between His-ΔYpeI and ΔYpeI. His-YpeI and His-ΔYpeI synthesized by CFPS were found to have the expected molecular weights and demonstrated distinct differences in enzyme activity. The analyzed enzymatic constants supported a significant decrease in substrate affinity and reaction rate as a result of YpeI's enzyme active site deletion. This result showed that CFPS could be used for in vitro protein synthesis, and quorum sensing could be inhibited at the enzymatic level due to the enzyme active site's deletion mutation.