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Precisely full length, circularizable, complementary RNA: an infectious form of potato spindle tuber viroid
The replication of many viral and subviral pathogens as well as the amplification of certain cellular genes proceeds via a rolling circle mechanism. For potato spindle tuber (PSTVd) and related viroids, the possible role of a circular (-)strand RNA as a template for synthesis of (+)strand progeny is...
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Published in: | Proceedings of the National Academy of Sciences - PNAS 1998-05, Vol.95 (11), p.6560-6565 |
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description | The replication of many viral and subviral pathogens as well as the amplification of certain cellular genes proceeds via a rolling circle mechanism. For potato spindle tuber (PSTVd) and related viroids, the possible role of a circular (-)strand RNA as a template for synthesis of (+)strand progeny is unclear. Infected plants appear to contain only multimeric linear (-)strand RNAs, and attempts to initiate infection with multimeric (-)PSTVd RNAs generally have failed. To examine critically the infectivity of monomeric (-)strand viroid RNAs, we have developed a ribozyme-based expression system for the production of precisely full length (-)strand RNAs whose temini are capable of undergoing facile circularization in vitro. Mechanical inoculation of tomato seedlings with electrophoretically purified (-)PSTVd RNA led to a small fraction of plants becoming infected whereas parallel assays with an analogous tomato planta macho viroid (-)RNA resulted in a much larger fraction of infected plants. Ribozyme-mediated production of (-)PSTVd RNA in transgenic plants led to the appearance of monomeric circular (-)PSTVd RNA and large amounts of (+)PSTVd progeny. No monomeric circular (-)PSTVd RNA could be detected in naturally infected plants by using either ribonuclease protection or electrophoresis under partially denaturing conditions. Although not a component of the normal replicative pathway, precisely full length (-)PSTVd RNA appears to contain all of the structural and regulatory elements necessary for initiation of viroid replication |
doi_str_mv | 10.1073/pnas.95.11.6560 |
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(Center for Engineering Plants for Resistance Against Pathogens, Davis, CA.) ; Hu, Y ; Owens, R.A</creator><creatorcontrib>Feldstein, P.A. (Center for Engineering Plants for Resistance Against Pathogens, Davis, CA.) ; Hu, Y ; Owens, R.A</creatorcontrib><description>The replication of many viral and subviral pathogens as well as the amplification of certain cellular genes proceeds via a rolling circle mechanism. For potato spindle tuber (PSTVd) and related viroids, the possible role of a circular (-)strand RNA as a template for synthesis of (+)strand progeny is unclear. Infected plants appear to contain only multimeric linear (-)strand RNAs, and attempts to initiate infection with multimeric (-)PSTVd RNAs generally have failed. To examine critically the infectivity of monomeric (-)strand viroid RNAs, we have developed a ribozyme-based expression system for the production of precisely full length (-)strand RNAs whose temini are capable of undergoing facile circularization in vitro. Mechanical inoculation of tomato seedlings with electrophoretically purified (-)PSTVd RNA led to a small fraction of plants becoming infected whereas parallel assays with an analogous tomato planta macho viroid (-)RNA resulted in a much larger fraction of infected plants. Ribozyme-mediated production of (-)PSTVd RNA in transgenic plants led to the appearance of monomeric circular (-)PSTVd RNA and large amounts of (+)PSTVd progeny. No monomeric circular (-)PSTVd RNA could be detected in naturally infected plants by using either ribonuclease protection or electrophoresis under partially denaturing conditions. Although not a component of the normal replicative pathway, precisely full length (-)PSTVd RNA appears to contain all of the structural and regulatory elements necessary for initiation of viroid replication</description><identifier>ISSN: 0027-8424</identifier><identifier>EISSN: 1091-6490</identifier><identifier>DOI: 10.1073/pnas.95.11.6560</identifier><identifier>PMID: 9601006</identifier><language>eng</language><publisher>United States: National Academy of Sciences of the United States of America</publisher><subject>ARN ; Base Sequence ; Biological Sciences ; Botany ; Circles ; CIRCULAR RNA ; Electrophoresis ; EXPERIMENTACION IN VIVO ; EXPERIMENTAL INFECTION ; EXPERIMENTATION IN VIVO ; Gels ; IN VIVO EXPERIMENTATION ; INFECCION EXPERIMENTAL ; INFECTION EXPERIMENTALE ; INFECTIVITY ; Inoculum ; LYCOPERSICON ESCULENTUM ; MOLECULAR CONFORMATION ; Molecular Sequence Data ; Molecules ; NEPOVIRUS ; NEPOVIRUSES ; NICOTIANA ; NICOTIANA BENTHAMIANA ; Nucleic Acid Conformation ; PATHOGENICITY ; Pathology ; PATOGENICIDAD ; PLANT VIRUSES ; PLANTAS TRANSGENICAS ; PLANTE TRANSGENIQUE ; Plasmids ; Potatoes ; POUVOIR PATHOGENE ; REPLICACION ; REPLICATION ; Ribonucleic acid ; RIBOZYMES ; RNA ; RNA probes ; RNA, Viral - chemistry ; RNA, Viral - genetics ; Solanum tuberosum - virology ; TOMATO PLANTA MACHO VIROID ; TOMATO RINGSPOT NEPOVIRUS ; TRANSGENIC PLANTS ; VIROIDE ; VIROIDES ; VIROIDS ; Viroids - physiology ; VIRUS DE LAS PLANTAS ; VIRUS DES VEGETAUX ; Virus Replication</subject><ispartof>Proceedings of the National Academy of Sciences - PNAS, 1998-05, Vol.95 (11), p.6560-6565</ispartof><rights>Copyright 1993-1998 National Academy of Sciences</rights><rights>Copyright National Academy of Sciences May 26, 1998</rights><rights>Copyright © 1998, The National Academy of Sciences 1998</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c606t-c50f915ed15b78a7532091861d0c39de6a32b9757266e51d1a5d5a90ab5f04d3</citedby><cites>FETCH-LOGICAL-c606t-c50f915ed15b78a7532091861d0c39de6a32b9757266e51d1a5d5a90ab5f04d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://www.pnas.org/content/95/11.cover.gif</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/45420$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/45420$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793,58238,58471</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/9601006$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Feldstein, P.A. (Center for Engineering Plants for Resistance Against Pathogens, Davis, CA.)</creatorcontrib><creatorcontrib>Hu, Y</creatorcontrib><creatorcontrib>Owens, R.A</creatorcontrib><title>Precisely full length, circularizable, complementary RNA: an infectious form of potato spindle tuber viroid</title><title>Proceedings of the National Academy of Sciences - PNAS</title><addtitle>Proc Natl Acad Sci U S A</addtitle><description>The replication of many viral and subviral pathogens as well as the amplification of certain cellular genes proceeds via a rolling circle mechanism. For potato spindle tuber (PSTVd) and related viroids, the possible role of a circular (-)strand RNA as a template for synthesis of (+)strand progeny is unclear. Infected plants appear to contain only multimeric linear (-)strand RNAs, and attempts to initiate infection with multimeric (-)PSTVd RNAs generally have failed. To examine critically the infectivity of monomeric (-)strand viroid RNAs, we have developed a ribozyme-based expression system for the production of precisely full length (-)strand RNAs whose temini are capable of undergoing facile circularization in vitro. Mechanical inoculation of tomato seedlings with electrophoretically purified (-)PSTVd RNA led to a small fraction of plants becoming infected whereas parallel assays with an analogous tomato planta macho viroid (-)RNA resulted in a much larger fraction of infected plants. Ribozyme-mediated production of (-)PSTVd RNA in transgenic plants led to the appearance of monomeric circular (-)PSTVd RNA and large amounts of (+)PSTVd progeny. No monomeric circular (-)PSTVd RNA could be detected in naturally infected plants by using either ribonuclease protection or electrophoresis under partially denaturing conditions. Although not a component of the normal replicative pathway, precisely full length (-)PSTVd RNA appears to contain all of the structural and regulatory elements necessary for initiation of viroid replication</description><subject>ARN</subject><subject>Base Sequence</subject><subject>Biological Sciences</subject><subject>Botany</subject><subject>Circles</subject><subject>CIRCULAR RNA</subject><subject>Electrophoresis</subject><subject>EXPERIMENTACION IN VIVO</subject><subject>EXPERIMENTAL INFECTION</subject><subject>EXPERIMENTATION IN VIVO</subject><subject>Gels</subject><subject>IN VIVO EXPERIMENTATION</subject><subject>INFECCION EXPERIMENTAL</subject><subject>INFECTION EXPERIMENTALE</subject><subject>INFECTIVITY</subject><subject>Inoculum</subject><subject>LYCOPERSICON ESCULENTUM</subject><subject>MOLECULAR CONFORMATION</subject><subject>Molecular Sequence Data</subject><subject>Molecules</subject><subject>NEPOVIRUS</subject><subject>NEPOVIRUSES</subject><subject>NICOTIANA</subject><subject>NICOTIANA BENTHAMIANA</subject><subject>Nucleic Acid Conformation</subject><subject>PATHOGENICITY</subject><subject>Pathology</subject><subject>PATOGENICIDAD</subject><subject>PLANT VIRUSES</subject><subject>PLANTAS TRANSGENICAS</subject><subject>PLANTE TRANSGENIQUE</subject><subject>Plasmids</subject><subject>Potatoes</subject><subject>POUVOIR PATHOGENE</subject><subject>REPLICACION</subject><subject>REPLICATION</subject><subject>Ribonucleic acid</subject><subject>RIBOZYMES</subject><subject>RNA</subject><subject>RNA probes</subject><subject>RNA, Viral - chemistry</subject><subject>RNA, Viral - genetics</subject><subject>Solanum tuberosum - virology</subject><subject>TOMATO PLANTA MACHO VIROID</subject><subject>TOMATO RINGSPOT NEPOVIRUS</subject><subject>TRANSGENIC PLANTS</subject><subject>VIROIDE</subject><subject>VIROIDES</subject><subject>VIROIDS</subject><subject>Viroids - physiology</subject><subject>VIRUS DE LAS PLANTAS</subject><subject>VIRUS DES VEGETAUX</subject><subject>Virus Replication</subject><issn>0027-8424</issn><issn>1091-6490</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1998</creationdate><recordtype>article</recordtype><recordid>eNqFkc-L1DAcxYMo67h6FgQleNCLM_tN2ySNeFkWf8Gious5pGk6mzFtapIurn-9qTOU1YOSQwjv8768bx5CDwlsCPDyZBxU3Ai6IWTDKINbaEVAkDWrBNxGK4CCr-uqqO6iezHuAEDQGo7QkWBAANgKffsUjLbRuGvcTc5hZ4ZtunyBtQ16cirYn6pxJr99PzrTmyGpcI0_fzh9idWA7dAZnayfIu586LHv8OiTSh7H0Q6tMzhNjQn4ygZv2_voTqdcNA8O9zG6ePP64uzd-vzj2_dnp-drzYCltabQCUJNS2jDa8VpWeSVakZa0KVoDVNl0QhOecGYoaQlirZUCVAN7aBqy2P0aj92nJretDpnDsrJMdg-Z5deWfmnMthLufVXsuA1F9n-7GAP_vtkYpK9jdo4pwaTF5Vc1IIKwv8LElYBJyVk8Olf4M5PYchfIAsgZcmr39DJHtLBxxhMtwQmIOeq5Vy1FFQSIueqs-PxzT0X_tBt1p8f9Nm4qMsAOReezI-UySf_JDPwaA_sYvJhISpaFTdydMpLtQ02yq9fiBAcRFnk8wvUP8_v</recordid><startdate>19980526</startdate><enddate>19980526</enddate><creator>Feldstein, P.A. (Center for Engineering Plants for Resistance Against Pathogens, Davis, CA.)</creator><creator>Hu, Y</creator><creator>Owens, R.A</creator><general>National Academy of Sciences of the United States of America</general><general>National Acad Sciences</general><general>National Academy of Sciences</general><general>The National Academy of Sciences</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>19980526</creationdate><title>Precisely full length, circularizable, complementary RNA: an infectious form of potato spindle tuber viroid</title><author>Feldstein, P.A. (Center for Engineering Plants for Resistance Against Pathogens, Davis, CA.) ; Hu, Y ; Owens, R.A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c606t-c50f915ed15b78a7532091861d0c39de6a32b9757266e51d1a5d5a90ab5f04d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1998</creationdate><topic>ARN</topic><topic>Base Sequence</topic><topic>Biological Sciences</topic><topic>Botany</topic><topic>Circles</topic><topic>CIRCULAR RNA</topic><topic>Electrophoresis</topic><topic>EXPERIMENTACION IN VIVO</topic><topic>EXPERIMENTAL INFECTION</topic><topic>EXPERIMENTATION IN VIVO</topic><topic>Gels</topic><topic>IN VIVO EXPERIMENTATION</topic><topic>INFECCION EXPERIMENTAL</topic><topic>INFECTION EXPERIMENTALE</topic><topic>INFECTIVITY</topic><topic>Inoculum</topic><topic>LYCOPERSICON ESCULENTUM</topic><topic>MOLECULAR CONFORMATION</topic><topic>Molecular Sequence Data</topic><topic>Molecules</topic><topic>NEPOVIRUS</topic><topic>NEPOVIRUSES</topic><topic>NICOTIANA</topic><topic>NICOTIANA BENTHAMIANA</topic><topic>Nucleic Acid Conformation</topic><topic>PATHOGENICITY</topic><topic>Pathology</topic><topic>PATOGENICIDAD</topic><topic>PLANT VIRUSES</topic><topic>PLANTAS TRANSGENICAS</topic><topic>PLANTE TRANSGENIQUE</topic><topic>Plasmids</topic><topic>Potatoes</topic><topic>POUVOIR PATHOGENE</topic><topic>REPLICACION</topic><topic>REPLICATION</topic><topic>Ribonucleic acid</topic><topic>RIBOZYMES</topic><topic>RNA</topic><topic>RNA probes</topic><topic>RNA, Viral - chemistry</topic><topic>RNA, Viral - genetics</topic><topic>Solanum tuberosum - virology</topic><topic>TOMATO PLANTA MACHO VIROID</topic><topic>TOMATO RINGSPOT NEPOVIRUS</topic><topic>TRANSGENIC PLANTS</topic><topic>VIROIDE</topic><topic>VIROIDES</topic><topic>VIROIDS</topic><topic>Viroids - physiology</topic><topic>VIRUS DE LAS PLANTAS</topic><topic>VIRUS DES VEGETAUX</topic><topic>Virus Replication</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Feldstein, P.A. 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(Center for Engineering Plants for Resistance Against Pathogens, Davis, CA.)</au><au>Hu, Y</au><au>Owens, R.A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Precisely full length, circularizable, complementary RNA: an infectious form of potato spindle tuber viroid</atitle><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle><addtitle>Proc Natl Acad Sci U S A</addtitle><date>1998-05-26</date><risdate>1998</risdate><volume>95</volume><issue>11</issue><spage>6560</spage><epage>6565</epage><pages>6560-6565</pages><issn>0027-8424</issn><eissn>1091-6490</eissn><abstract>The replication of many viral and subviral pathogens as well as the amplification of certain cellular genes proceeds via a rolling circle mechanism. For potato spindle tuber (PSTVd) and related viroids, the possible role of a circular (-)strand RNA as a template for synthesis of (+)strand progeny is unclear. Infected plants appear to contain only multimeric linear (-)strand RNAs, and attempts to initiate infection with multimeric (-)PSTVd RNAs generally have failed. To examine critically the infectivity of monomeric (-)strand viroid RNAs, we have developed a ribozyme-based expression system for the production of precisely full length (-)strand RNAs whose temini are capable of undergoing facile circularization in vitro. Mechanical inoculation of tomato seedlings with electrophoretically purified (-)PSTVd RNA led to a small fraction of plants becoming infected whereas parallel assays with an analogous tomato planta macho viroid (-)RNA resulted in a much larger fraction of infected plants. Ribozyme-mediated production of (-)PSTVd RNA in transgenic plants led to the appearance of monomeric circular (-)PSTVd RNA and large amounts of (+)PSTVd progeny. No monomeric circular (-)PSTVd RNA could be detected in naturally infected plants by using either ribonuclease protection or electrophoresis under partially denaturing conditions. Although not a component of the normal replicative pathway, precisely full length (-)PSTVd RNA appears to contain all of the structural and regulatory elements necessary for initiation of viroid replication</abstract><cop>United States</cop><pub>National Academy of Sciences of the United States of America</pub><pmid>9601006</pmid><doi>10.1073/pnas.95.11.6560</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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ispartof | Proceedings of the National Academy of Sciences - PNAS, 1998-05, Vol.95 (11), p.6560-6565 |
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source | Open Access: PubMed Central; JSTOR Archival Journals and Primary Sources Collection |
subjects | ARN Base Sequence Biological Sciences Botany Circles CIRCULAR RNA Electrophoresis EXPERIMENTACION IN VIVO EXPERIMENTAL INFECTION EXPERIMENTATION IN VIVO Gels IN VIVO EXPERIMENTATION INFECCION EXPERIMENTAL INFECTION EXPERIMENTALE INFECTIVITY Inoculum LYCOPERSICON ESCULENTUM MOLECULAR CONFORMATION Molecular Sequence Data Molecules NEPOVIRUS NEPOVIRUSES NICOTIANA NICOTIANA BENTHAMIANA Nucleic Acid Conformation PATHOGENICITY Pathology PATOGENICIDAD PLANT VIRUSES PLANTAS TRANSGENICAS PLANTE TRANSGENIQUE Plasmids Potatoes POUVOIR PATHOGENE REPLICACION REPLICATION Ribonucleic acid RIBOZYMES RNA RNA probes RNA, Viral - chemistry RNA, Viral - genetics Solanum tuberosum - virology TOMATO PLANTA MACHO VIROID TOMATO RINGSPOT NEPOVIRUS TRANSGENIC PLANTS VIROIDE VIROIDES VIROIDS Viroids - physiology VIRUS DE LAS PLANTAS VIRUS DES VEGETAUX Virus Replication |
title | Precisely full length, circularizable, complementary RNA: an infectious form of potato spindle tuber viroid |
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