Characterization of small-spored Alternaria from Argentinean crops through a polyphasic approach

• Published in: International journal of food microbiology 2017-09, Vol.257, p.206-215
• Main Authors: da Cruz Cabral, Lucía, Rodriguero, Marcela, Stenglein, Sebastián, Fog Nielsen, Kristian, Patriarca, Andrea
• Format: Article
• Language: English
• Subjects: Agricultural products; Alternaria; Alternaria - classification; Alternaria - genetics; Alternaria - isolation & purification; Argentina; Bayes Theorem; Bayesian analysis; Blueberries; Blueberry Plants - microbiology; Crops; Data processing; DNA, Fungal - genetics; Economic impact; Endopolygalacturonase gene; Food; Food safety; Fruit - microbiology; Fruits; Health risks; Lycopersicon esculentum - microbiology; Metabolites; Metabolites profile; Metabolomics; Phylogenetics; Phylogeny; Piper nigrum - microbiology; Polygalacturonase - genetics; Polyphasic approach; Population studies; Risk; Secondary Metabolism; Species; Spores, Fungal; Taxonomy; Tomatoes; Triticum - microbiology; Vegetables - microbiology; Wheat
• ISSN: 0168-1605; 1879-3460
• DOI: 10.1016/j.ijfoodmicro.2017.06.026

Small-spored Alternaria have been isolated from a wide variety of food crops, causing both economic losses and human health risk due to the metabolites produced. Their taxonomy has been discussed widely, but no scientific consensus has been established in this field to date. Argentina is a major exporter of agricultural products, so it is essential to thoroughly understand the physiological behaviour of this pathogen in a food safety context. Thus, the objective of this work was to characterize small-spored Alternaria spp. obtained from tomato fruits, pepper fruits, wheat grains and blueberries from Argentina by a polyphasic approach involving metabolomic and phylogenetic analyses based on molecular and morphological characters. Morphological analysis divided the population studied into three groups; A. arborescens sp.-grp., A. tenuissima sp.-grp., and A. alternata sp.-grp. However, when these characters were simultaneously analysed with molecular data, no clearly separated groups were obtained. Haplotype network and phylogenetic analysis (both Bayesian and maximum parsimony) of a conserved region yielded the same result, suggesting that all isolates belong to the same species. Furthermore, no correlation could be established between morphological species-groups and a metabolite or group of metabolites synthesized. Thus, the whole set of analyses carried out in the present work supports the hypothesis that these small-spored Alternaria isolates from food belong to the same species. Identification at species level through classical morphology or modern molecular techniques does not seem to be a useful tool to predict toxicological risk in food matrices. The detection of any small-spored Alternaria from Section Alternaria (D.P. Lawr., Gannibal, Peever & B.M. Pryor 2013) in food implies a potential toxicological risk. •Small-spored Alternaria were characterized by a polyphasic approach.•Three morphospecies were detected, all capable of producing mycotoxins.•Neither Bayesian nor maximum parsimony analyses of endoPG gene yielded robust groups.•Identification at section level is enough to predict mycotoxin risk in food.•Results supported the hypothesis that the isolates belong to a single species.