An Algorithm for Alignment-free Sequence Comparison using Logical Match

This paper proposes an algorithm for alignment-free sequence comparison using Logical Match. Here, we compute the score using fuzzy membership values which generate automatically from the number of matches and mismatches. We demonstrate the method with both the artificial and real datum. The results...

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Bibliographic Details
Published in:arXiv.org 2014-07
Main Authors: Sanil Shanker KP, Sherly, Elizabeth, Austin, Jim
Format: Article
Language:English
Subjects:
Algorithms
Alignment
Computing time
Datum (elevation)
Deoxyribonucleic acid
DNA
Fuzzy logic
Gene sequencing
Online Access:Get full text
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Summary:This paper proposes an algorithm for alignment-free sequence comparison using Logical Match. Here, we compute the score using fuzzy membership values which generate automatically from the number of matches and mismatches. We demonstrate the method with both the artificial and real datum. The results show the uniqueness of the proposed method by analyzing DNA sequences taken from NCBI databank with a novel computational time.
ISSN:2331-8422
DOI:10.48550/arxiv.1407.2237