Condensation of circular DNA

A simple model of a circularly closed dsDNA in a poor solvent is considered as an example of a semi-flexible polymer with self-attraction. To find the ground states, the conformational energy is computed as a sum of the bending and torsional elastic components and the effective self-attraction energ...

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Bibliographic Details
Published in:arXiv.org 2013-04
Main Author: Starostin, E L
Format: Article
Language:English
Subjects:
Attraction
Control stability
Deoxyribonucleic acid
Dependence
DNA
Molecular conformation
Polymers
Online Access:Get full text
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Summary:A simple model of a circularly closed dsDNA in a poor solvent is considered as an example of a semi-flexible polymer with self-attraction. To find the ground states, the conformational energy is computed as a sum of the bending and torsional elastic components and the effective self-attraction energy. The model includes a relative orientation or sequence dependence of the effective attraction forces between different pieces of the polymer chain. Two series of conformations are analysed: a multicovered circle (a toroid) and a multifold two-headed racquet. The results are presented as a diagram of state. It is suggested that the stability of particular conformations may be controlled by proper adjustment of the primary structure. Application of the model to other semi-flexible polymers is considered.
ISSN:2331-8422
DOI:10.48550/arxiv.1304.1747