Enhancement of DFT-calculations at Petascale: Nuclear Magnetic Resonance, Hybrid Density Functional Theory and Car-Parrinello calculations

• Published in: arXiv.org 2013-05
• Main Authors: Varini, Nicola, Ceresoli, Davide, Martin-Samos, Layla, Girotto, Ivan, Cavazzoni, Carlo
• Format: Article
• Language: English
• Subjects: Atomic structure; Biology; Carbon nanotubes; Chemical equilibrium; Computation; Computer simulation; Density functional theory; Electronic properties; Electronic structure; Material properties; NMR; Nuclear magnetic resonance; Organic chemistry; Periodic variations; Porphyrins; Silicon dioxide; Solid state physics; Supercomputers; Symmetry; Workload
• ISSN: 2331-8422
• DOI: 10.48550/arxiv.1305.7313

One of the most promising techniques used for studying the electronic properties of materials is based on Density Functional Theory (DFT) approach and its extensions. DFT has been widely applied in traditional solid state physics problems where periodicity and symmetry play a crucial role in reducing the computational workload. With growing compute power capability and the development of improved DFT methods, the range of potential applications is now including other scientific areas such as Chemistry and Biology. However, cross disciplinary combinations of traditional Solid-State Physics, Chemistry and Biology drastically improve the system complexity while reducing the degree of periodicity and symmetry. Large simulation cells containing of hundreds or even thousands of atoms are needed to model these kind of physical systems. The treatment of those systems still remains a computational challenge even with modern supercomputers. In this paper we describe our work to improve the scalability of Quantum ESPRESSO \cite{Quantum-Espresso} for treating very large cells and huge numbers of electrons. To this end we have introduced an extra level of parallelism, over \emph{\emph{electronic bands}}, in three kernels for solving computationally expensive problems: the Sternheimer equation solver (Nuclear Magnetic Resonance, package QE-GIPAW), the Fock operator builder (electronic ground-state, package PWscf) and most of the Car-Parrinello routines (Car-Parrinello dynamics, package CP). Final benchmarks show our success in computing the Nuclear Magnetic Response (NMR) chemical shift of a large biological assembly, the electronic structure of defected amorphous silica with hybrid exchange-correlation functionals and the equilibrium atomic structure of height Porphyrins anchored to a Carbon Nanotube, on many thousands of CPU cores.