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Fast and accurate predictions of covalent bonds in chemical space
We assess the predictive accuracy of perturbation theory based estimates of changes in covalent bonding due to linear alchemical interpolations among molecules. We have investigated σ bonding to hydrogen, as well as σ and π bonding between main-group elements, occurring in small sets of iso-valence-...
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Published in: | The Journal of chemical physics 2016-05, Vol.144 (17), p.174110-174110 |
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creator | Chang, K. Y. Samuel Fias, Stijn Ramakrishnan, Raghunathan von Lilienfeld, O. Anatole |
description | We assess the predictive accuracy of perturbation theory based estimates of changes in covalent bonding due to linear alchemical interpolations among molecules. We have investigated σ bonding to hydrogen, as well as σ and π bonding between main-group elements, occurring in small sets of iso-valence-electronic molecules with elements drawn from second to fourth rows in the p-block of the periodic table. Numerical evidence suggests that first order Taylor expansions of covalent bonding potentials can achieve high accuracy if (i) the alchemical interpolation is vertical (fixed geometry), (ii) it involves elements from the third and fourth rows of the periodic table, and (iii) an optimal reference geometry is used. This leads to near linear changes in the bonding potential, resulting in analytical predictions with chemical accuracy (∼1 kcal/mol). Second order estimates deteriorate the prediction. If initial and final molecules differ not only in composition but also in geometry, all estimates become substantially worse, with second order being slightly more accurate than first order. The independent particle approximation based second order perturbation theory performs poorly when compared to the coupled perturbed or finite difference approach. Taylor series expansions up to fourth order of the potential energy curve of highly symmetric systems indicate a finite radius of convergence, as illustrated for the alchemical stretching of H
2
+
. Results are presented for (i) covalent bonds to hydrogen in 12 molecules with 8 valence electrons (CH4, NH3, H2O, HF, SiH4, PH3, H2S, HCl, GeH4, AsH3, H2Se, HBr); (ii) main-group single bonds in 9 molecules with 14 valence electrons (CH3F, CH3Cl, CH3Br, SiH3F, SiH3Cl, SiH3Br, GeH3F, GeH3Cl, GeH3Br); (iii) main-group double bonds in 9 molecules with 12 valence electrons (CH2O, CH2S, CH2Se, SiH2O, SiH2S, SiH2Se, GeH2O, GeH2S, GeH2Se); (iv) main-group triple bonds in 9 molecules with 10 valence electrons (HCN, HCP, HCAs, HSiN, HSiP, HSiAs, HGeN, HGeP, HGeAs); and (v) H
2
+
single bond with 1 electron. |
doi_str_mv | 10.1063/1.4947217 |
format | article |
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2
+
. Results are presented for (i) covalent bonds to hydrogen in 12 molecules with 8 valence electrons (CH4, NH3, H2O, HF, SiH4, PH3, H2S, HCl, GeH4, AsH3, H2Se, HBr); (ii) main-group single bonds in 9 molecules with 14 valence electrons (CH3F, CH3Cl, CH3Br, SiH3F, SiH3Cl, SiH3Br, GeH3F, GeH3Cl, GeH3Br); (iii) main-group double bonds in 9 molecules with 12 valence electrons (CH2O, CH2S, CH2Se, SiH2O, SiH2S, SiH2Se, GeH2O, GeH2S, GeH2Se); (iv) main-group triple bonds in 9 molecules with 10 valence electrons (HCN, HCP, HCAs, HSiN, HSiP, HSiAs, HGeN, HGeP, HGeAs); and (v) H
2
+
single bond with 1 electron.</description><identifier>ISSN: 0021-9606</identifier><identifier>EISSN: 1089-7690</identifier><identifier>DOI: 10.1063/1.4947217</identifier><identifier>PMID: 27155628</identifier><identifier>CODEN: JCPSA6</identifier><language>eng</language><publisher>United States: American Institute of Physics</publisher><subject>Accuracy ; Ammonia ; Chemical bonds ; Covalence ; Covalent bonds ; Electrons ; Estimates ; Finite difference method ; Geometry ; Hydrogen sulfide ; Interpolation ; Methyl bromide ; Organic chemistry ; Periodic table ; Perturbation methods ; Perturbation theory ; Physics ; Potential energy ; Predictions ; Taylor series</subject><ispartof>The Journal of chemical physics, 2016-05, Vol.144 (17), p.174110-174110</ispartof><rights>Author(s)</rights><rights>2016 Author(s). Published by AIP Publishing.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c484t-237dd205919b1fad74d203bdb53e9082abd0a39722b189dd424192de8e358a8f3</citedby><cites>FETCH-LOGICAL-c484t-237dd205919b1fad74d203bdb53e9082abd0a39722b189dd424192de8e358a8f3</cites><orcidid>0000-0003-1256-2396</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://pubs.aip.org/jcp/article-lookup/doi/10.1063/1.4947217$$EHTML$$P50$$Gscitation$$H</linktohtml><link.rule.ids>314,780,782,784,795,27924,27925,76383</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27155628$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chang, K. Y. Samuel</creatorcontrib><creatorcontrib>Fias, Stijn</creatorcontrib><creatorcontrib>Ramakrishnan, Raghunathan</creatorcontrib><creatorcontrib>von Lilienfeld, O. Anatole</creatorcontrib><title>Fast and accurate predictions of covalent bonds in chemical space</title><title>The Journal of chemical physics</title><addtitle>J Chem Phys</addtitle><description>We assess the predictive accuracy of perturbation theory based estimates of changes in covalent bonding due to linear alchemical interpolations among molecules. We have investigated σ bonding to hydrogen, as well as σ and π bonding between main-group elements, occurring in small sets of iso-valence-electronic molecules with elements drawn from second to fourth rows in the p-block of the periodic table. Numerical evidence suggests that first order Taylor expansions of covalent bonding potentials can achieve high accuracy if (i) the alchemical interpolation is vertical (fixed geometry), (ii) it involves elements from the third and fourth rows of the periodic table, and (iii) an optimal reference geometry is used. This leads to near linear changes in the bonding potential, resulting in analytical predictions with chemical accuracy (∼1 kcal/mol). Second order estimates deteriorate the prediction. If initial and final molecules differ not only in composition but also in geometry, all estimates become substantially worse, with second order being slightly more accurate than first order. The independent particle approximation based second order perturbation theory performs poorly when compared to the coupled perturbed or finite difference approach. Taylor series expansions up to fourth order of the potential energy curve of highly symmetric systems indicate a finite radius of convergence, as illustrated for the alchemical stretching of H
2
+
. Results are presented for (i) covalent bonds to hydrogen in 12 molecules with 8 valence electrons (CH4, NH3, H2O, HF, SiH4, PH3, H2S, HCl, GeH4, AsH3, H2Se, HBr); (ii) main-group single bonds in 9 molecules with 14 valence electrons (CH3F, CH3Cl, CH3Br, SiH3F, SiH3Cl, SiH3Br, GeH3F, GeH3Cl, GeH3Br); (iii) main-group double bonds in 9 molecules with 12 valence electrons (CH2O, CH2S, CH2Se, SiH2O, SiH2S, SiH2Se, GeH2O, GeH2S, GeH2Se); (iv) main-group triple bonds in 9 molecules with 10 valence electrons (HCN, HCP, HCAs, HSiN, HSiP, HSiAs, HGeN, HGeP, HGeAs); and (v) H
2
+
single bond with 1 electron.</description><subject>Accuracy</subject><subject>Ammonia</subject><subject>Chemical bonds</subject><subject>Covalence</subject><subject>Covalent bonds</subject><subject>Electrons</subject><subject>Estimates</subject><subject>Finite difference method</subject><subject>Geometry</subject><subject>Hydrogen sulfide</subject><subject>Interpolation</subject><subject>Methyl bromide</subject><subject>Organic chemistry</subject><subject>Periodic table</subject><subject>Perturbation methods</subject><subject>Perturbation theory</subject><subject>Physics</subject><subject>Potential energy</subject><subject>Predictions</subject><subject>Taylor series</subject><issn>0021-9606</issn><issn>1089-7690</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><recordid>eNp90EtLxDAUhuEgijNeFv4BCbhRoWNOkjbJchi8geBG1yFNUqy0TU3aAf-9lRkVBF2FwMPH4UXoBMgCSMGuYMEVFxTEDpoDkSoThSK7aE4IhUwVpJihg5ReCSEgKN9HMyogzwsq52h5Y9KATeewsXaMZvC4j97VdqhDl3CosA1r0_huwGXoXMJ1h-2Lb2trGpx6Y_0R2qtMk_zx9j1EzzfXT6u77OHx9n61fMgsl3zIKBPOUZIrUCVUxgk-_Vjpypx5RSQ1pSOGKUFpCVI5xykHRZ2XnuXSyIodovPNbh_D2-jToNs6Wd80pvNhTBqEFIoJTthEz37R1zDGbrpOU5gyibwQdFIXG2VjSCn6Svexbk1810D0Z1cNett1sqfbxbFsvfuWXyEncLkBydaD-Yz379qfeB3iD9S9q9gHtAyMOA</recordid><startdate>20160507</startdate><enddate>20160507</enddate><creator>Chang, K. Y. Samuel</creator><creator>Fias, Stijn</creator><creator>Ramakrishnan, Raghunathan</creator><creator>von Lilienfeld, O. Anatole</creator><general>American Institute of Physics</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>H8D</scope><scope>L7M</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0003-1256-2396</orcidid></search><sort><creationdate>20160507</creationdate><title>Fast and accurate predictions of covalent bonds in chemical space</title><author>Chang, K. Y. Samuel ; Fias, Stijn ; Ramakrishnan, Raghunathan ; von Lilienfeld, O. Anatole</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c484t-237dd205919b1fad74d203bdb53e9082abd0a39722b189dd424192de8e358a8f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Accuracy</topic><topic>Ammonia</topic><topic>Chemical bonds</topic><topic>Covalence</topic><topic>Covalent bonds</topic><topic>Electrons</topic><topic>Estimates</topic><topic>Finite difference method</topic><topic>Geometry</topic><topic>Hydrogen sulfide</topic><topic>Interpolation</topic><topic>Methyl bromide</topic><topic>Organic chemistry</topic><topic>Periodic table</topic><topic>Perturbation methods</topic><topic>Perturbation theory</topic><topic>Physics</topic><topic>Potential energy</topic><topic>Predictions</topic><topic>Taylor series</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chang, K. Y. Samuel</creatorcontrib><creatorcontrib>Fias, Stijn</creatorcontrib><creatorcontrib>Ramakrishnan, Raghunathan</creatorcontrib><creatorcontrib>von Lilienfeld, O. Anatole</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Aerospace Database</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>MEDLINE - Academic</collection><jtitle>The Journal of chemical physics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chang, K. Y. Samuel</au><au>Fias, Stijn</au><au>Ramakrishnan, Raghunathan</au><au>von Lilienfeld, O. Anatole</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Fast and accurate predictions of covalent bonds in chemical space</atitle><jtitle>The Journal of chemical physics</jtitle><addtitle>J Chem Phys</addtitle><date>2016-05-07</date><risdate>2016</risdate><volume>144</volume><issue>17</issue><spage>174110</spage><epage>174110</epage><pages>174110-174110</pages><issn>0021-9606</issn><eissn>1089-7690</eissn><coden>JCPSA6</coden><abstract>We assess the predictive accuracy of perturbation theory based estimates of changes in covalent bonding due to linear alchemical interpolations among molecules. We have investigated σ bonding to hydrogen, as well as σ and π bonding between main-group elements, occurring in small sets of iso-valence-electronic molecules with elements drawn from second to fourth rows in the p-block of the periodic table. Numerical evidence suggests that first order Taylor expansions of covalent bonding potentials can achieve high accuracy if (i) the alchemical interpolation is vertical (fixed geometry), (ii) it involves elements from the third and fourth rows of the periodic table, and (iii) an optimal reference geometry is used. This leads to near linear changes in the bonding potential, resulting in analytical predictions with chemical accuracy (∼1 kcal/mol). Second order estimates deteriorate the prediction. If initial and final molecules differ not only in composition but also in geometry, all estimates become substantially worse, with second order being slightly more accurate than first order. The independent particle approximation based second order perturbation theory performs poorly when compared to the coupled perturbed or finite difference approach. Taylor series expansions up to fourth order of the potential energy curve of highly symmetric systems indicate a finite radius of convergence, as illustrated for the alchemical stretching of H
2
+
. Results are presented for (i) covalent bonds to hydrogen in 12 molecules with 8 valence electrons (CH4, NH3, H2O, HF, SiH4, PH3, H2S, HCl, GeH4, AsH3, H2Se, HBr); (ii) main-group single bonds in 9 molecules with 14 valence electrons (CH3F, CH3Cl, CH3Br, SiH3F, SiH3Cl, SiH3Br, GeH3F, GeH3Cl, GeH3Br); (iii) main-group double bonds in 9 molecules with 12 valence electrons (CH2O, CH2S, CH2Se, SiH2O, SiH2S, SiH2Se, GeH2O, GeH2S, GeH2Se); (iv) main-group triple bonds in 9 molecules with 10 valence electrons (HCN, HCP, HCAs, HSiN, HSiP, HSiAs, HGeN, HGeP, HGeAs); and (v) H
2
+
single bond with 1 electron.</abstract><cop>United States</cop><pub>American Institute of Physics</pub><pmid>27155628</pmid><doi>10.1063/1.4947217</doi><tpages>14</tpages><orcidid>https://orcid.org/0000-0003-1256-2396</orcidid><oa>free_for_read</oa></addata></record> |
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source | American Institute of Physics (AIP) Publications; American Institute of Physics:Jisc Collections:Transitional Journals Agreement 2021-23 (Reading list) |
subjects | Accuracy Ammonia Chemical bonds Covalence Covalent bonds Electrons Estimates Finite difference method Geometry Hydrogen sulfide Interpolation Methyl bromide Organic chemistry Periodic table Perturbation methods Perturbation theory Physics Potential energy Predictions Taylor series |
title | Fast and accurate predictions of covalent bonds in chemical space |
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